Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01285 ATGTCTGGACGCGGCGTCACCGTCCTCAACGTGGCGGAGAAGCCGTCAGTGGCGAAATCGGTATCAAACATACTTTCAAGGAACCAAAACCTTCGAGTTAGGGACGGTCGTTCTCGCTACAACAGGATCTTCGAGTTCGATTACACAATTCGCGGCCAACCTTGTCACATGCTTTTCACCTCCGTCATCGGTCATCTCATGGAACTTGAATTTGATGATCGGTACCGGAAATGGTACTCTTGTGATCCCGCCGATCTATTCCAAGCTCCTGTTCATAAATCTGTTCCTGAGGATAAGAAAGATATTAAGAGGACATTAGAGGAGGAAGCTAGGCGGTGTCAGTGGCTTGTGTTGTGGCTTGATTGTGATAGAGAAGGCGAGAATATTGCGTTTGAAGTTGTTGATGTTTGTACTGCAGCAAATCCTCGTCTTACTATTAAGAGAGCTCGATTTTCTGCATTGATTGACAGGGAAATTCACCAGGCTGTGCAGAATCTTGTTGAGCCTAATAAGTGGTTTGCTGATGCAGTGGATGCTAGGCAGGAAATAGACCTTCGTATAGGCGCTTCGTTCACCAGATTTCAGACTATGTTAATGAAAGATGCTTTTGTCATAGATACTGTTACAGACGGCAGGAATATCATCTTGAGTTATGGCCCTTGCCAGTTCCCTACGCTTGGATTTGTTGTGGAAAGATATTGGGAGATACAAGCACATGAACCAGAAAACTTTTGGTCAATCAATTGTTCTCATAGATCAGAGGAAGGCATTGCTACTTTCAGCTGGGGGCGGGGACATTTGTTTGATTATACATATGCTGTCATAATATACGAGATGTGCATTGAGGAACCAACTGCAACCGTGACAAATGTTAGACAACAGGAGAAGCTGAAGTATCCTCCCCATCCTCTTAGTACTATTGAGCTTGAGAAACGGGCTTCACGATACTTCCGGATGAGCTCTGAGCACACAATGAAGGTGGCAGAAGAACTTTACCAAGGTGGTTTCATCAGTTATCCTCGAACAGAAACTGATAACTTTTCTTCAAGGACTGATTTGCATGCAATTGTACAAGAACAACAAGGGCATCCTGAATGGGGAATATATGCACAGCGGTTGTTGGACCCTGGGGCGGGACTTTGGAGAAACCCTAGAGGTGGTGGACATGATGACAAGGCCCATCCACCCATCCACCCCACTAAATTTTCTGCTGGAGAATCAGGATGGAGCCAAGACCACCGTAGACTGTATGAATTAGTTGTTCGCCACTTCCTGGCATGTGTCTCAAAGCCGGCTGTAGGAGCCGAAACCACAGTGGAAATTGATATTGCTGGTGAACTATTTTCTTCATGTGGGAGGGTGATTCTAGAGAAAAACTACCTGGATGTCTATCCCTATGAATCTTGGGGTGGATCAATGATTCCACCATATACTATTGATCAACAGTTCATTCCAACAACATTGACCCTTGATCCAGGAGTAACCAGACCACCACCTCTTCTTAGTGAAGCTGATTTGCTGAGTTGTATGGACAAGGAGGGCATTGGTACGGATGCTACAATGCATGATCACATCAAGAAGCTGCTCGATCGATTCTATGCAACTAAGGATGCTAGCATGCGTTTCACACCAACTAATCTGGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTCTGGAAACCATATCTTAGAGCAGTTATGGAACGCGATATGAAATCAGTCAGTGAAGGGACCAAAAGCAAAGCTGAAGTTTTGGATACTAGTTTGCAGCAGATGAAAGCTTGTTTCTTAGATGCAAGATTAAATAAAGTGAAACTTTTAGAAGCCATGGCAATATTTTTCGAAAGATCAAATAGAGTTGGCAGCGATGAGCAGAATGCAACTGGGGAAGTTGTTCGACGGTGTGGACTTTGCCAAGAATCAGATATGGTGCTAAAGAAAAACCGAGATGGCAATTTTATGGTTGGATGCTTGGGTTACCCTCAGTGTAGAAGTGCTGTCTGGCTCCCTGGATCAGTATCAGAAGCGATTGTGACCACCAATACTTGCAACAATTGCACTCCTGGTTTGTGA 2085 0.4456 MSGRGVTVLNVAEKPSVAKSVSNILSRNQNLRVRDGRSRYNRIFEFDYTIRGQPCHMLFTSVIGHLMELEFDDRYRKWYSCDPADLFQAPVHKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAANPRLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFVIDTVTDGRNIILSYGPCQFPTLGFVVERYWEIQAHEPENFWSINCSHRSEEGIATFSWGRGHLFDYTYAVIIYEMCIEEPTATVTNVRQQEKLKYPPHPLSTIELEKRASRYFRMSSEHTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQDHRRLYELVVRHFLACVSKPAVGAETTVEIDIAGELFSSCGRVILEKNYLDVYPYESWGGSMIPPYTIDQQFIPTTLTLDPGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASMRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKSVSEGTKSKAEVLDTSLQQMKACFLDARLNKVKLLEAMAIFFERSNRVGSDEQNATGEVVRRCGLCQESDMVLKKNRDGNFMVGCLGYPQCRSAVWLPGSVSEAIVTTNTCNNCTPGL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01285 694 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 599 IPR023405 -
Tsu07g01285 694 Pfam Toprim domain 9 153 IPR006171 -
Tsu07g01285 694 Gene3D - 2 169 - -
Tsu07g01285 694 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Tsu07g01285 694 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 692 IPR000380 GO:0003677|GO:0003917|GO:0006265
Tsu07g01285 694 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 ProSiteProfiles Toprim domain profile. 7 152 IPR006171 -
Tsu07g01285 694 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Tsu07g01285 694 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 692 - -
Tsu07g01285 694 Gene3D Bacterial Topoisomerase I, domain 1 625 673 - -
Tsu07g01285 694 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Tsu07g01285 694 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Tsu07g01285 694 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Tsu07g01285 694 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Tsu07g01285 694 SMART toprim5 7 142 IPR006171 -
Tsu07g01285 694 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01285 Tsu-Chr7 11198549 11209256 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01285 K03165 - jre:109018851 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01285 07 11198549 11209256 Tsu07g01285 07 11198549 11209256 ECH