Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01254 ATGTGGCACCGTTTAtcatcttcaaaactcaacctCACAACTTCTAGTTTAGGGTTAGGATTAGGGTTTCTTAGTCGATCGTTCTCATCTGAACCGGTGAAGAGGTTTGCTGCGTTATGGGGAAACGGCGATTACGGTAGATTGGGTCTCGGTAATTTGAATTCTCAATGGAAACCTGCTATTTGCACCTCCTTCCATAACCAAAACGTTAATTCCATTGCTTGTGGCGGTGCTCACACACTCTTCTTAACAGACAATGGATGTGTTTATGCTACTGGTCTCAACGATTTTGGACAGCTTGGTACATCGGAGAGTAAACAATACTCACTTGTGCCGCTTCAAGTTTTTGGGCATGAGAAGAAAGTTGTGCAGATATCTGCTGGTTATAATCATTCGAGTGCAATAACAGAGGATGGAGAACTATACATGTGGGGAAAGAATACAACTGGGCAGCTTGGACTTGGAAAAAGGGCTCCCAACATAGTTCCTCTGCCAACTAAAGTGGAATCCTTGGATGGAATCACCGTTAAAATGGCAGCTCTGGGTTCTGAGCACTCGGTGGCTATTAGTGATGAAGGAGAGGCCTTTAGTTGGGGAACGGGAGTGTCTGGTAGACTTGGTCATGGCCATGAGTCAAGTACACTAGGATTCTTCAAAAGTTACAGTGAATACACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGATGCTGACCTCAGCTTGTACTGATGAAAATGGTTCTGTGTTTATATTTGGAGAGAAAGGGATTGACAAATTGCTCTTGAAGGGGATGAGGAATGCAACAAAACCATCATTGATTAGTGAACTTCCATACGCTGAAGAAGTTGCTTGTGGTGGCTATCATACCTGTGTCTTGACAAATATTGGCGAGCTATATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGCATAGGGTCCTCATATGCCATTCCTTCACCTGAAAAGGTTCAAGGGCCATTCTTGGAGTCTTCTGTTGTTCAGGTCTCTTGTGGTTGGAAGCATACAGCAGCCATTTCTGGGGGAAGAGTCTTCACATGGGGTTGGGGAGGTTCTAATGGAACTTTCTCTGATGATGGACATTCTTCAGGTGGACAATTGGGTCATGGAAGTGATGTGGATTTTATAAATCCTTCAAGAGTTTGCTTTGCAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACAGGTGCTATACTTGAGTATGCATAG 1263 0.4299 MWHRLSSSKLNLTTSSLGLGLGFLSRSFSSEPVKRFAALWGNGDYGRLGLGNLNSQWKPAICTSFHNQNVNSIACGGAHTLFLTDNGCVYATGLNDFGQLGTSESKQYSLVPLQVFGHEKKVVQISAGYNHSSAITEDGELYMWGKNTTGQLGLGKRAPNIVPLPTKVESLDGITVKMAALGSEHSVAISDEGEAFSWGTGVSGRLGHGHESSTLGFFKSYSEYTPRLIKDLEGIKVKYVAAGMLTSACTDENGSVFIFGEKGIDKLLLKGMRNATKPSLISELPYAEEVACGGYHTCVLTNIGELYTWGSNENGCLGIGSSYAIPSPEKVQGPFLESSVVQVSCGWKHTAAISGGRVFTWGWGGSNGTFSDDGHSSGGQLGHGSDVDFINPSRVCFAEDVKALQVSCGFNHTGAILEYA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Tsu07g01254 420 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 33 420 - -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 86 135 IPR000408 -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 374 416 IPR000408 -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 40 83 IPR000408 -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 304 353 IPR000408 -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 192 243 IPR000408 -
Tsu07g01254 420 Pfam Regulator of chromosome condensation (RCC1) repeat 138 189 IPR000408 -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 253 IPR000408 -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 303 IPR000408 -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 419 IPR000408 -
Tsu07g01254 420 PANTHER OS11G0545800 PROTEIN 33 420 - -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 356 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 139 155 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 351 372 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Tsu07g01254 420 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Tsu07g01254 420 Gene3D - 34 162 IPR009091 -
Tsu07g01254 420 Gene3D - 163 419 IPR009091 -
Tsu07g01254 420 SUPERFAMILY RCC1/BLIP-II 39 417 IPR009091 -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 138 IPR000408 -
Tsu07g01254 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 139 192 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01254 Tsu-Chr7 10915502 10924384 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01254 - - gmx:100811823 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01254 07 10915502 10924384 Tsu07g01254 07 10915502 10924384 ECH