Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01189 atggcagaagaagaagataacgGAAGCACAAGCagagaagaacaagaagaagcaTTGGTCGCTTTAATCGAACACCGCACCCACGAAGTTAACCATCTCCATAGACGCATCGCTTATTACACAAATCAGCTTGAAGAAGCGGAAAAGAGATTAAAAGATACAGAATCAAAATTGGCTCGTCTTCGAGGTCAAACTAATCCAGTTCaatctaaaactaaaaaattaactacttctgataatgataataataataatggaattGTAGCAGTGAAGACAGAACCTAGATCAAATAGTCCTATTATTGATAGGAATAATGAGCGTTCTTACAAAACTAATCATAATCAATCTAAACCGGCACTTGTTATTCCTGCTGTTACTCCTAAGATTTCGCGGCCtcctgctgctgctgctgccaGAGCTTCTTGTTCTGAAACAGTCACTCCACCGGTTTCTTCTGCTTCGGTTACTGCCGGAAAATCTGATAAGGCTCGTCGTGAGCAGCAAAATGTTGAAGTTAAAGATAAAGGGATGAAAAGAAAATTTGAACAGAAAGAACACCAGGAATTGATTCCTTTAATACGTAAGAGTTCGACAGTGAAAATGGTACACTGCCAAGGAAGCAACCACATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAGATTTTTGCGACTAGTGCTTTGGACGGAGTGGTCAACTTTTGGCAAGTCCAAGCTAGGGGATCAGGAGCCTCTCTGCTTAATTCTTCTGATTCCGCATCCCAAAAAAAGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGAAACCGGCTCTTTTCAGTATATACCGCTGATGGTGGAGACTCACAAGTATCAATTACAGATCAGAATAAACAAGGGGGAGCACGTGTGAAATATTTAGAGGACAAGCCCCATTTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAGATACATGTTTTGTAACCGGTGGAAGTGACCATGCTGTTATACTTTGGCGTGAGCAGGATGGTGAGAACAAATGGAAGCCAAGACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTCTGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCAGACAGGAGAATATTTGGGTTTGATGTTGGTGTAGGAAGAGCAGATTTCAGTCACCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCGTGTGACTTCAACTTGTTTATGGTTCAAACAGGGACTCACGAGAAGCAGCTTCGATTATTTGATATTAGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGAATCCCAATCAGCTCTTATAAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCAGCGGATCCTGTGATTCACATATTTGATATAAGATATAATATTAACAGGCCTTCGCAATCTATAAGAGCTCATCAGAAACGAGTCTTCGGAGCCCTGTGGCTTCAGTCTCTTCCTCTTCTCATTTCCATATCATCTGATCTCCAAATTGGGTTGCACACGCTGCAGAACTTCTCCACTGCTTGCTACTACATACACATACACCCTTCTCTTCTTTCTGCCTTCCCAATCAGTGATTCAATGGAAGCAAATGAAGTGGGCACGGACACTCAGGATAAACTTGCTGGCTTTATTTTCATGTGCAATAGAATGACAAAACCAGAGTGCTATCGATACCGGGTTTTTGCACTTCCTGCTGGGAGAAGGTATATTGTCGAGAGGATCAATCCTGGCACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTTTATGGCACATATTTAGCAACCTCAACTGGGATGCTAAATATACAACCGTATGCTTTTGGGGGAAGGTTCCCTGCTCAGGTGAGTTTCAAAATTCACCAAGACTGTTTGCCATTGCCAGAGAATCACTTCAAACATGctataaaagataattatcagAATCACTCTAACAAGTTCAATCCTGAACTCAATATTGGACAGGTAAGAAATCTATTAGAAATGTTTCGCCCGTTACATCCTACGTCAACTGCACCCAGACATCCTGTTTTGAACGGGATACATTCTGCCTCAACGTTGCAACTTCCACCAGCAAATAGCGTTTTTCATCAGACATCAAGGGCATCTCTTTCTGAAGATTCATCTTTGCCTAGGATGTCACCTACTCAAGCTATTAGTCTGTTGAGCCATAAATATCTAAATGGAGTTGAGGAGCCTACTGGTTGGGCCAATTCAGTTGCTGCTCAGTCTGTGCCATCCCAAGCTTCAAGGAATCAGATTCATGCACTAGCAAGCATTGATACAACAGAGGGTACTTATGCAACTGGGACGGTCAGCAGTTATACTCCATCACTTCCATATCCTCAATACGCACACCAGAATTTCCTTAACCCGCAACCTGAGTTTCATTCATCCCTGATAAATAATGGCATTGGTCATGCTCAGTCAACGCAAAATTATCAGCATGCACGGCTTAATGTACATCCACAACCTCAATTTCATGCTTCCGTGATGACTGCAGGCAGTAGCCACAGTCACGATCAATCGCTACAATATTCTCAACAAGCATATCTCAATGTCTCTCATCCACCACCTGAATTTCATTCTTCCACGATGGCAAATAACAGTTATACTCAATCACTGCAAGATCCTCAACAGAGTTTCCTAAACCCACCACCACCTTGTGTTTATCCCCCAGCAGCGAATGTGGACAGCAGTCATGCTCAAATGCTGTGGGCACCTCACGGTACTCATCAGAATATCCAAAACCTGCAACCTGGCTATTATCCCTCTGCAGTAAATGTGGGCAGCAGTTACGCAACTGCTCAATCATTTCAAGATCCTCAATACACACATCAGCAAGCTCAAAATCTACAACCTGGTTATGGTTCCTCAGTGAATATGGACAATACCAATGCCATGATGCAGTCACATGCTTCGTCATCATTATATTATCCATATGTTCCTCAACAAGTTATATCTGGCACATATGCTGTTCAAGGGTCTGCACCCATAGGAAGTGAGTACTGTCAGCCATCTATGCGGACAGAATAA 3126 0.4117 MAEEEDNGSTSREEQEEALVALIEHRTHEVNHLHRRIAYYTNQLEEAEKRLKDTESKLARLRGQTNPVQSKTKKLTTSDNDNNNNGIVAVKTEPRSNSPIIDRNNERSYKTNHNQSKPALVIPAVTPKISRPPAAAAARASCSETVTPPVSSASVTAGKSDKARREQQNVEVKDKGMKRKFEQKEHQELIPLIRKSSTVKMVHCQGSNHISSQHKRKLRSIALCPVNDQIFATSALDGVVNFWQVQARGSGASLLNSSDSASQKKRWPEDIAWHPEGNRLFSVYTADGGDSQVSITDQNKQGGARVKYLEDKPHFKGIINGIVFMPWEDTCFVTGGSDHAVILWREQDGENKWKPRPLHRNLHSSAVMGVAGLQQKQIVLSAGADRRIFGFDVGVGRADFSHQIDSKCMSVVPNPCDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNINRPSQSIRAHQKRVFGALWLQSLPLLISISSDLQIGLHTLQNFSTACYYIHIHPSLLSAFPISDSMEANEVGTDTQDKLAGFIFMCNRMTKPECYRYRVFALPAGRRYIVERINPGTYLFLFDTDVKLLYGTYLATSTGMLNIQPYAFGGRFPAQVSFKIHQDCLPLPENHFKHAIKDNYQNHSNKFNPELNIGQVRNLLEMFRPLHPTSTAPRHPVLNGIHSASTLQLPPANSVFHQTSRASLSEDSSLPRMSPTQAISLLSHKYLNGVEEPTGWANSVAAQSVPSQASRNQIHALASIDTTEGTYATGTVSSYTPSLPYPQYAHQNFLNPQPEFHSSLINNGIGHAQSTQNYQHARLNVHPQPQFHASVMTAGSSHSHDQSLQYSQQAYLNVSHPPPEFHSSTMANNSYTQSLQDPQQSFLNPPPPCVYPPAANVDSSHAQMLWAPHGTHQNIQNLQPGYYPSAVNVGSSYATAQSFQDPQYTHQQAQNLQPGYGSSVNMDNTNAMMQSHASSSLYYPYVPQQVISGTYAVQGSAPIGSEYCQPSMRTE 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 140 173 - -
Tsu07g01189 1041 Gene3D - 403 548 IPR015943 GO:0005515
Tsu07g01189 1041 SMART dcd 567 695 IPR013989 -
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 144 158 - -
Tsu07g01189 1041 Pfam WD domain, G-beta repeat 462 485 IPR001680 GO:0005515
Tsu07g01189 1041 Coils Coil 30 64 - -
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 58 120 - -
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 159 173 - -
Tsu07g01189 1041 Gene3D - 158 402 IPR015943 GO:0005515
Tsu07g01189 1041 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 530 - -
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 60 119 - -
Tsu07g01189 1041 ProSiteProfiles DCD domain profile. 567 695 IPR013989 -
Tsu07g01189 1041 MobiDBLite consensus disorder prediction 901 924 - -
Tsu07g01189 1041 SMART WD40_4 302 345 IPR001680 GO:0005515
Tsu07g01189 1041 SMART WD40_4 490 529 IPR001680 GO:0005515
Tsu07g01189 1041 SMART WD40_4 448 485 IPR001680 GO:0005515
Tsu07g01189 1041 SMART WD40_4 205 244 IPR001680 GO:0005515
Tsu07g01189 1041 SMART WD40_4 354 392 IPR001680 GO:0005515
Tsu07g01189 1041 Pfam Development and cell death domain 570 693 IPR013989 -
Tsu07g01189 1041 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 530 - -
Tsu07g01189 1041 SUPERFAMILY WD40 repeat-like 217 531 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01189 Tsu-Chr7 10145632 10157666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01189 - - gmx:100799587 736.873