Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01155 atgatgaagagaaagagagaagacaAAGATTCTATGGATATCATATGGCAAACTCCAGCAAATCCTCCGCTACCACAAGACTACATCTTCCGTAACGGAATTCGATACGTTAGACCTTACTACTTCGAATTTATTGCTCATGTGAAAAATCGATGGGCGGGGAAAACTATCGTAGATTTGTTTGCGGAGGAGTTTAAAGGTCGGCCTTATGATTATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTTGATGGTGAAATGGTGCCGGTTTCGTATGTTGTTAAATCGTCTCAAAAGATAAGCCATTTTGTACACAGGCATGAACCACCTGTGATGGCTTGTGAGGTTCCTATTCTTTTAAAAGAACCGGATGTGCTAACTGTTTGTAAGCCGGCATCTGTCCCTGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTCAAGCAGAGCATGGGCTGGCTCCTGTGTTTCCTATCCATCGACTGGATCGCCTTGTCTCTGGACTCCTTATTATGGCCAGAAATGCTTCAAAAGCTGACAGTTTTAGGCAAGAGATTGAAGCTGGCTTAGTCAAGAAACAGTATATTGCAAAAGTAGTTGGCAAGTTTCCGGAGAGTGAGCTAATTGTTGATGCCAATATAGACTATAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTGCAAAGGGGAAGGTTGCCTCAACAAAATTTACTCGAATTAGTTGCAATGGTACTCATAGTATTGTTTTATGTGAACCAGTCACTGGCCGCACTCATCAGATACGCGTTCATTTACAGTATTCTGGACACCCGATAGCGAATGACATGCTGTACATTTCAGAACAACCTGTTGATCGATCTATTAATGGGTCAGCTGCTGATAGATCAGCTCGCATATCTAATGCTTCTTTAACATCAAATTTTGGTGAAAAAGTGCCTAACGAATGTCAAGAAAATTCCAATGAGGATTTTGACTTTGATTCCATGTGTACGAACTGTCCAAATTTGGCACCAAAAGGGTATGAAATCTCAAATCCTTCATCttaa 1071 0.4062 MMKRKREDKDSMDIIWQTPANPPLPQDYIFRNGIRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDGEMVPVSYVVKSSQKISHFVHRHEPPVMACEVPILLKEPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPVFPIHRLDRLVSGLLIMARNASKADSFRQEIEAGLVKKQYIAKVVGKFPESELIVDANIDYNAREGRSTAEVRDSAKGKVASTKFTRISCNGTHSIVLCEPVTGRTHQIRVHLQYSGHPIANDMLYISEQPVDRSINGSAADRSARISNASLTSNFGEKVPNECQENSNEDFDFDSMCTNCPNLAPKGYEISNPSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01155 356 SUPERFAMILY Pseudouridine synthase 109 291 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g01155 356 Gene3D Pseudouridine synthase 110 316 - -
Tsu07g01155 356 ProSitePatterns Rlu family of pseudouridine synthase signature. 164 178 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g01155 356 Pfam RNA pseudouridylate synthase 126 274 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g01155 356 PANTHER PSEUDOURIDINE SYNTHASE 13 293 - -
Tsu07g01155 356 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 13 293 - -
Tsu07g01155 356 CDD PseudoU_synth_ScRIB2 102 290 - -
Tsu07g01155 356 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 51 296 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01155 K15454 - gmx:100811500 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01155 07 9853523 9859712 Tsu07g01155 07 9853523 9859712 ECH