Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01035 ATGCATGTCACAGAGGATCTAGGGTTTTTTAACCTGGTCCTTGTTGTGGTGGTTTGTGTGATTTTTCCGGTGATCGGATTTATAATTCGCCGGAAATGGAAACTCGCGGTTGCTAGAAATGAAGAGATCAAGAGGCTTTTGATTTTGGCTGCTGAGGAAACTGCCAGGGTTGAGAGAGAATCGTCGTTTCCTTATGTGTCTGCTCCGGTTGTTTCCGCCGTCACGAGCAATTATCAATGTGCTCTCTGCTATTTTCCCGCCACTGCGCGCTGCGCTCAGTGTAAATCAGTTCGTTACTGTTCCACTCATTGCCAAACCGTTCACTGGCGTCAAGGTCATAAATTTGAATGTCGTCCTCCCAACAAAACACATCAGAACGATGACATAATAAGCGATATTGGCAAGAGGGAAGTGGAGCAAGACTACTCCGGTATCCATGAGGAGAAATCTGAAAGTAGAGGTACAGAGCATAAAATATCCTCTGAAGATACCCGCTTTTCTCCTGAGGTTTCACCTAGAAAGGATGATAATGTTAGAGCTCGGTTTCTTGCAGAAGAAAATTTAGCAGATTCTAATTCTGAATTTTCCAGTAACTCATTTTCTGGATTTTCGGCTTCCACAAGTTCTAATGATTCATCTGATGATTCTTCTGTGTGTGAGAGTATCATCTCAAATGAGCACGACAGATCAGAGGGACATATTTCTGCTGTTCCCACCCTTGACATTATTGATAAAACCACAAGGGATAGTAAGTTGGATGCAGCAATGTCTTCTTCACCAAAGTTTGCTAGTTTGCTTGATTCAGTCGATGGTTCTTCTACaattcataaattaaatcatattGCAGCTGGTTCTAGAAAAGAAGAGAGGAAACTTGCATCGAATGGTATTTCAGGCTCAAACACGTGGAAGGGGGTAAAAACTGCACCTTCTGGATTCTGGGATGAAGCTCTCGATTCGGGAGGGATAAAAGTTGACGTCAATAATGACATTCATCAAATCCATTCTGATGAATCCACCTGTGAAAAGAATGATTCTGGATTGTCATTTCACTTCCAATTCAGTACCATGCCTCCTTTGCATGTACAAGATACTGAGGCTAAAGAATCTTTGCCCGATGATGCTTTTCCAAACTCTGTTGGGAAGAATGTGCCACATCCAGGATCAGCATCATCTGAGAATGACAGTATGAATTCCTTAAAGGCAAGGAGGAACCAGTCATTCATCAACGGAAAAGATTTCAATATTATTAGCAATACTCCTAGTGGTTCTGAATCTGAAAAATTGGAATCAAAAGACAGGTCTGAGCTACCTCTATATTCCTCTTCCTCCCAGTCCTCCAATATTGGCAAAGATTCAAGTTTTGTAGATGCTACTAGTATCCATAACTTTAAATCATTTAGCTCTGTGGCATCAAATCATGTTGTGGATAACCATGGTTGCACCTTGAAGTCCACCGATATTAGAGGCCAGACACGCGAGGTTGTTGATTCTAAATTAGCTTCTACAACTGAAAGAAATTCACATCCCAGTACAAAACATAGGAATGGTGAATATGGGACTGTCACTTCTCATGTTGCTAACTATTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTAAAAGTCGTTGATCAGTTTAGAGGATCGAATTTGTCAAAGCACATTTCTTTAGCAGTTGGGAGTGATATTGCTGGAAAATACAGCGACAAGGTTCTTTTTCCATATGAATCATTTGTCAAGCTTTATAACTACAACAAAGTGGAGCTGCACCCATTCGGTCTTATAAATTGTGGAAACAGTTGCTACGCTAATGCTGTACTTCAGTGCCTAGCTTTTACACCATCCTTAACTGCTTATTTGCTTCAAGGACTACATTCTAAATCATgtgtaaataaaaaatggtgttTCACCTGTGAATTTGAAAGATTGATTATGAAGTCAAAGGACACTAAATCTGCACTATCTCCAATGAGTATACTCTCTCAACTACAGAGTATTGGGAGTCAGCTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTCTAagGCATGCTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCGGGTTCATTGGAGGACACTACTTTAATGGGTCAAACATTTGGAGGATACCTTCGATCAAAgATAAAATGCATGAAATGTGGTGGGAAGTCCGAGCGTCATGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCAGAGGCTCTTCGACGCTTTACAAGCACTGAGTCTTTGGATGGAGAAAACAAGTACCACTGTGTCAGatGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATATTCTTACAGTTGCATTGAAGAGATTTCAGTCTGGAAAGTTCGGAAAGCTTAACAAGCCTATTCAATTTCCGGAAATACTTGACCTGGCGCCTTTCATGAGTGGGACCAGTGATAAGACACCCATTTACAGATTGTATGGAGTGGTTGTTCATTTGGATATTATGAATGCTGCTTTTTCCGGTCATTATGTGTGCTACGTGAAGAACATCCAAAACAAGTGGTTCAAGGTTGACGACAGTGTGGTAAGTCCCTCTGTTTCTATTTGTTCGCACATCTTGACTCTTGAGAGCAAATTTCATTTGGTTCCCAAATGTATTTCTTGA 2709 0.4031 MHVTEDLGFFNLVLVVVVCVIFPVIGFIIRRKWKLAVARNEEIKRLLILAAEETARVERESSFPYVSAPVVSAVTSNYQCALCYFPATARCAQCKSVRYCSTHCQTVHWRQGHKFECRPPNKTHQNDDIISDIGKREVEQDYSGIHEEKSESRGTEHKISSEDTRFSPEVSPRKDDNVRARFLAEENLADSNSEFSSNSFSGFSASTSSNDSSDDSSVCESIISNEHDRSEGHISAVPTLDIIDKTTRDSKLDAAMSSSPKFASLLDSVDGSSTIHKLNHIAAGSRKEERKLASNGISGSNTWKGVKTAPSGFWDEALDSGGIKVDVNNDIHQIHSDESTCEKNDSGLSFHFQFSTMPPLHVQDTEAKESLPDDAFPNSVGKNVPHPGSASSENDSMNSLKARRNQSFINGKDFNIISNTPSGSESEKLESKDRSELPLYSSSSQSSNIGKDSSFVDATSIHNFKSFSSVASNHVVDNHGCTLKSTDIRGQTREVVDSKLASTTERNSHPSTKHRNGEYGTVTSHVANYSANSKSGLKTSVLKVVDQFRGSNLSKHISLAVGSDIAGKYSDKVLFPYESFVKLYNYNKVELHPFGLINCGNSCYANAVLQCLAFTPSLTAYLLQGLHSKSCVNKKWCFTCEFERLIMKSKDTKSALSPMSILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGVNASGSLEDTTLMGQTFGGYLRSKIKCMKCGGKSERHERMMDLTVEIEGEISTLAEALRRFTSTESLDGENKYHCVRCKSYEKAKKKLTVSEAPNILTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKTPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVSPSVSICSHILTLESKFHLVPKCIS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01035 902 Pfam Ubiquitin carboxyl-terminal hydrolase 594 879 IPR001394 GO:0004843|GO:0016579
Tsu07g01035 902 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 595 610 IPR018200 GO:0004843|GO:0006511
Tsu07g01035 902 MobiDBLite consensus disorder prediction 436 451 - -
Tsu07g01035 902 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 880 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 411 425 - -
Tsu07g01035 902 SUPERFAMILY HIT/MYND zinc finger-like 75 120 - -
Tsu07g01035 902 Gene3D Cysteine proteinases 582 887 - -
Tsu07g01035 902 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 594 900 IPR028889 -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 143 174 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 411 451 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 499 519 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 366 398 - -
Tsu07g01035 902 ProSiteProfiles Zinc finger MYND-type profile. 80 117 IPR002893 -
Tsu07g01035 902 Gene3D - 69 123 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 192 218 - -
Tsu07g01035 902 MobiDBLite consensus disorder prediction 384 398 - -
Tsu07g01035 902 ProSitePatterns Zinc finger MYND-type signature. 80 117 IPR002893 -
Tsu07g01035 902 Pfam MYND finger 80 117 IPR002893 -
Tsu07g01035 902 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 20 880 - -
Tsu07g01035 902 SUPERFAMILY Cysteine proteinases 590 879 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01035 Tsu-Chr7 8624124 8630372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01035 572 877 Miscellaneous Gene Families AT4G31670 50.649 4.30e-112 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01035 K11855 - gmx:100795674 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01035 07 8624124 8630372 Tsu07g01035 07 8624124 8630372 ECH