Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01030 ATGAAATTCTCAATAATCCAGTGCTGCAGACACAGACAACATAACAGTGcaacttcatcatcttcattacCATGGATATCACCTCTCAATTTTACAAAACCTATAAAACCTAAACTAGATCCACCACCTGAAATCACTGTCActgaaaaaaggaaaaagaacaaATATATCACTCATGATATTGCTATCAATTTGATCAAACGAGAGAAAGATCCACAACAtgctttgaaaatatttaacatgatatctGAACAAAAAGGTTTTAATCACAACAATGCTACTTACGCTTCGATTTTACAAAAGCTAGCTCAGTTTAAGAAGTTTCAAGCCGTTGAACGAGTTTTACATCAAATGACTTATGAAACTTGTAAATTTCATGAGGGTGTATTTATTAATCTTATGAAGCATTATTCGAAATGTTGTTTTCATGAAAAAGTGTTGGATACATTTTTGTCTATTCAGACAATTGTTCGTGAAAAGCCTTCTCCGAAAGCTATTAGCTCGTGTCTCAATCTTTTGGTTGATTCGAATCGGATTGATTTGGCGCGGAAGTTGCTCTTGCATGCCAAGAGGAGTTTAACTTATAAGCCAAATGTCTGCATTTTCAATATTTTGGTGAAGTATCATTGTAAAAATGGAGATCTTGAGTCTGCTTTTGAAGTTGTTAAAGAAATGAGAAACTCTAAGTATTCATATCCTAATGTAATTACCTACTCAACCTTGATGGATGGTCTCTGTCGAAATGGGAAACTTAAAGAAGCTTTTGAACTTTTTGAGGAAATGGTTTCCAAGGATCGGATTATGCCTGATCCCCTTACTTACAATGTTTTGATCAATGGATTTTGCCGTGGAGGGAAACCTGATCGCGCTAGGAATGTAAttgaatttatgaaaaataatggTTGTTGTCCTAATGTATTCAATTACTCTGCTCTAGTGGATGGATTATGTAAAGCGGGGAAACCGCAAGATGCAAAAGAGGTTTTTGCTGAGATGAAGAGTTCTGGTTTGAAACCTGATACAGTTACCTACACTTCTTTGATCAATTTCTTTTGTAGGAATGGGCAAATTGATGAGGCTATTGAGTTGCTTAAAgaaatgaaggaaaataaatgTGAGGCTGATACTGTTACATTCAATGTGATGCTTGGAGGCTTGTGCAGAGAAGGTAGATTTTATGAGGCTTTGGATATGATTGAGAAACTCCCACACCAGGGTATCTATTTGAACAAAGGTAGTTATAGGATTGTCCTAAATTCCTTAACGCAAAAATGTGAGTTGAGGAAGGCGAAGAATTTATTAGGACTAATGCTAACTAGGGGGTTTGTACCCCATTATGCTACCTCAAATGAATTATTGGTTCGTTTTTGTAAAGAAGGCATGGTTGACGATGCTGCTGCGGCTCTATTTGACTTGGTGGATATGGGGTTCCAGCCACAACCTGATTGTTGGGAACTTATAATTGAATTAATCTGTAGGGACAGAAAGTTATTGTATGTTTTTGAGCTACTTGATGAACTAGTGACAGCAAATTCTTGA 1539 0.3431 MKFSIIQCCRHRQHNSATSSSSLPWISPLNFTKPIKPKLDPPPEITVTEKRKKNKYITHDIAINLIKREKDPQHALKIFNMISEQKGFNHNNATYASILQKLAQFKKFQAVERVLHQMTYETCKFHEGVFINLMKHYSKCCFHEKVLDTFLSIQTIVREKPSPKAISSCLNLLVDSNRIDLARKLLLHAKRSLTYKPNVCIFNILVKYHCKNGDLESAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGKLKEAFELFEEMVSKDRIMPDPLTYNVLINGFCRGGKPDRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKPQDAKEVFAEMKSSGLKPDTVTYTSLINFFCRNGQIDEAIELLKEMKENKCEADTVTFNVMLGGLCREGRFYEALDMIEKLPHQGIYLNKGSYRIVLNSLTQKCELRKAKNLLGLMLTRGFVPHYATSNELLVRFCKEGMVDDAAAALFDLVDMGFQPQPDCWELIIELICRDRKLLYVFELLDELVTANS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01030 512 Gene3D Tetratricopeptide repeat domain 423 512 IPR011990 GO:0005515
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Tsu07g01030 512 Pfam PPR repeat family 339 388 IPR002885 -
Tsu07g01030 512 Pfam PPR repeat family 233 283 IPR002885 -
Tsu07g01030 512 Pfam PPR repeat 300 333 IPR002885 -
Tsu07g01030 512 Pfam PPR repeat 195 226 IPR002885 -
Tsu07g01030 512 Gene3D Tetratricopeptide repeat domain 43 155 IPR011990 GO:0005515
Tsu07g01030 512 Gene3D Tetratricopeptide repeat domain 156 285 IPR011990 GO:0005515
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Tsu07g01030 512 Gene3D Tetratricopeptide repeat domain 287 422 IPR011990 GO:0005515
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Tsu07g01030 512 SUPERFAMILY HCP-like 208 401 - -
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tsu07g01030 512 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 18 510 - -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 342 376 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 413 444 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Tsu07g01030 512 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Tsu07g01030 512 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 18 510 - -
Tsu07g01030 512 Pfam PPR repeat 413 442 IPR002885 -
Tsu07g01030 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01030 Tsu-Chr7 8585500 8587078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01030 234 511 Glycosyltransferase AT1G05670 29.496 2.95e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01030 - - mtr:MTR_3g100600 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01030 07 8585500 8587078 Tsu07g01030 07 8585500 8587078 ECH