Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01025 atggATTCCGTTCCTTATTTCGATGGAAACATCCACAAAATTCTCGATACTCGATTTCTTCATCCTCGCCCTGATGTTAATCAGAGTTTGCAAACACACTCCTCTTTGATTCGAAGACTTTCTCAAGAAAAAGATTTACAGGGACATCTTGGTTGTGTCAATACTATTGCTTGGAATTCAAAAGGTTCATTATTGATATCCGGATCAGATGATACTCGGATGAATATTTGGAGCTATTCTGGACAGAAGCTATTGCATTCAATTGACACTGGACATACTGCAAATATATTCTGTACTAAGTTCATACCAGAAACTTCTGATGATCTTGTTGCATCTGGAGCTGGAGATGCTGAAGTTCGGTTATTCAATAGGTCTCGCATAAGTGGGAATGGACTTAATGATATTCCCATTGTTCCATCGGCACTTTACCAATGCCACACTCGTAGAGTCAAGAAATTAGCTGTTGAAAACGGAAATCCCAATGTGGTATGGAGTGCCAGTGAAGATGGAACCTTAAGACAACATGATTTCCGGGAAAGTACCTCTTGTCCTCCTGCAGGATCTCCACACCAAGAGTGTCACAGTGTCCTACTTGACTTACGGAATGGAGCTAAAAGGTCCCTTGCTGATCCTCCCAAACAAGTCCTTGCTTTAAAATCTGTTGATATAAGTTCAACTAGACCTCATTTGCTCCTTGTTGGCGGGAGTGATGCCTTTGCACGTCTGTATGATAGAAGGATGCTACCACCTCTAAGCGCCTGTGGGAAAAGAATGCCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGTTTGCACTTAACTCATGTTACATTTAGTCCTGATGGATCTGAGGTTCTCCTTAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATAATGCTGGAGCGAATGAGGTGCAATATACTTCAGGAGATGTTTCAAAGCTCACGACTTACTCTCCAACAGTTAATGGGGTAGAATTGCAGCCTTCTGTGTCAAATGTCTTCCCAAATGGTTTCAATACTAAAAAGAACATCGCTGCCAAGCTTGACAAGTGTAGGAAGCTAATAAAATATGCTAAGAAGTCATTGGAGGATGGGACACCCTATTATGGAATTGAGGCATGTAATGAAGTTTTGAATGGCTACAATCATATCATTGGGCCTGCACTAAAACATGAATGCTTGTGTACTCGTGCTGCACTATTGTTGAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCCACACTGCTAGGAAAATCGATAAATCCGCATATAAACCACTTTACTACATGTCAGAAGCATTGTCTCAGTTGGGAAAACACGAAGAAGCTTTGGATTTTGCTGTTGCTTCCCACTCGCTGGCCCCATCCAAATCTGAAGTTGCTGAAAGAGTGGAGAAAGTGAAGAAGGATATTGTTGTAGCTGAAACTGAAAAAAATAGTAAGACAAACGATGGAGCGTCAAGGATTGACGGAAGAGGTGGAAGAATGCTATCATTAAGTGACATTCTCTACCGATCTGAGGCTAATAGTGATACTTCACAAGATGGTCCGAGATCTGACAGGGATGATTCTGATTATGACGAGGAATTGGAGTTGGGCTTTGAAACATCAATATCTGATGACGAAGAACATGATTCTGATCCAAATATTCTTCATGGGAATTTGAATCTTAGAATTCATCGAAGTGGTGACTCAAAGGAAAATGTTGGTGCAAGTAGCTCGTGCGAATCACCCTCGTCGTCATCATCACAGAATGGTAGAGCGTCATACCAGCCTGAAGCAGCTATTGATATGAAGCAGAGATTTATTGGGCACTGCAATGTGGGAACTGATATAAAACAGGCCAATTTTCTCGGTCAAAGAGGTGAATATGTTGCCAGCGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGGACTGGGAGACTCATGAAAATTTTGAGTGGCGACGAATCTGTTGTAAATTGCGTACAATGTCATccatttgattttgttgtggcAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCTCCTGTTCCGTCTTCTGTAGCTGGTGGTTCTGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAATAATCAACAAAAGTTATCTCGTAATAGGGATTCGATCCTGCCCTTTGAGCTCTTAGAACCATTTAGAATGCATGAGTTTCCTGAAGGATCACTACGTCTGCGCCCTTTTGAATGTGCCCAAAGCTAA 2295 0.4135 MDSVPYFDGNIHKILDTRFLHPRPDVNQSLQTHSSLIRRLSQEKDLQGHLGCVNTIAWNSKGSLLISGSDDTRMNIWSYSGQKLLHSIDTGHTANIFCTKFIPETSDDLVASGAGDAEVRLFNRSRISGNGLNDIPIVPSALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRESTSCPPAGSPHQECHSVLLDLRNGAKRSLADPPKQVLALKSVDISSTRPHLLLVGGSDAFARLYDRRMLPPLSACGKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGSEVLLSYSGEHVYLMNVNNAGANEVQYTSGDVSKLTTYSPTVNGVELQPSVSNVFPNGFNTKKNIAAKLDKCRKLIKYAKKSLEDGTPYYGIEACNEVLNGYNHIIGPALKHECLCTRAALLLKRKWKNDAHMAIRDCHTARKIDKSAYKPLYYMSEALSQLGKHEEALDFAVASHSLAPSKSEVAERVEKVKKDIVVAETEKNSKTNDGASRIDGRGGRMLSLSDILYRSEANSDTSQDGPRSDRDDSDYDEELELGFETSISDDEEHDSDPNILHGNLNLRIHRSGDSKENVGASSSCESPSSSSSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLMKILSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLVAMENNQQKLSRNRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01025 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Tsu07g01025 764 SUPERFAMILY WD40 repeat-like 40 695 IPR036322 GO:0005515
Tsu07g01025 764 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 21 763 - -
Tsu07g01025 764 SUPERFAMILY TPR-like 401 476 IPR011990 GO:0005515
Tsu07g01025 764 SMART WD40_4 211 244 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 136 176 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 265 307 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 39 78 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 81 123 IPR001680 GO:0005515
Tsu07g01025 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Tsu07g01025 764 Gene3D - 31 130 IPR015943 GO:0005515
Tsu07g01025 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Tsu07g01025 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 21 763 IPR045151 -
Tsu07g01025 764 Gene3D - 612 747 IPR015943 GO:0005515
Tsu07g01025 764 MobiDBLite consensus disorder prediction 522 541 - -
Tsu07g01025 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Tsu07g01025 764 Gene3D Tetratricopeptide repeat domain 348 487 IPR011990 GO:0005515
Tsu07g01025 764 MobiDBLite consensus disorder prediction 582 606 - -
Tsu07g01025 764 MobiDBLite consensus disorder prediction 579 606 - -
Tsu07g01025 764 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Tsu07g01025 764 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Tsu07g01025 764 Gene3D - 131 346 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01025 Tsu-Chr7 8535165 8547394 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01025 K11807 - gmx:100793917 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01025 07 8535165 8547394 Tsu07g01025 07 8535165 8547394 ECH