Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00954 ATGCTTCGAAACAGACCCAATCTGTCTCTGTTTCACTCTCTCTTCCAAAATGCAAAGTCTTCACTTATTATCTTTCGCCAAATTTTAGAATCTAATGAAAATCCCAATGCTTTTACTTTTTCATTACTCATCAAAGCTTGTCTTTCATCACCTTCTTTTGTTCATGGTTCAACAACTGCAGCATTACAAGCACGCCAGATTCAAACCCAATCACTGAAAAGGGGAATTAACCAATTTATTCATGTTAATACTTCTCTTATTGATTTGTATATGAAACTTGGTTTTACTTGTCATGCACGCCACCTGTTTGATGAAATGTCTTTTAGAGATGTTGTTTCATGGAATGTATTGATTTGTGGTTATTCACAAAATGGGTATCTTTATAATGCTTTTCAACTCTTTGTAGACATGTTAAGAGAGGGTTTTAGGCCTAATCAAACTACAATTGTTAGTTTGTTACCCTCTTGTGGTTGTTTTGAGCTGATTTTTCAAGGTAGATCGATTCATGGGTTTGGAATCAAAGATGGTTTTTGTTCGGATTCTCATTTGAATAATGCTCTTATGTCAATGTATGCTAAATGCGATGATTTCGAAGCTTCACAActtttgtttgatgaaatggTTGAGAAAAATGTTGTTTCCTGGAATACTATGATTGGTGCTTATGGCCAAAATGGTCTTTTTGATAAGGCTATTCTTTGCTTTAAAGAGATGCTGAAGGAAGGTTTTCAACCGAGTTCGGTGACGATGATGAACCTTGTGTCAGCAAATGCTCTTCCGGAAACTGTTCATTGTTATGTTATCAAATGTGGGTTTACCAATGATGCTTCTGTCGTTACTTCGCTGGTTTGTCTATATGCAAAGCAAGGGTTCACAGATATTGCAAGACTACTTTACAAATACTATCCTACTAAAGACTTGATTTCGTTAACAGCGATAATCTCTAGCTATTCTGAAAAAGGTGATATAGATTCTGCGGTAGAGTGTTTTAACCAAACTATGCAGTTAGATATAAAACCAGATGCAGTTGTCTTGATTTGTGTACTTCATGGAATTACAAGTCCTTCACATTTTGCTATTGGATGCATTTTCCACGGTTATGGGGTGAAGAGTGGGCTGTCTAATCATTGCTTAGTTGCAAATGGGTTAATAAGTTTGTATTCTAGATTTGATGAGATAGAAGCCGCTTTGTCTTTGTTTTATGATATAAGAGAAAAACCATTGATCACATGGAATTCTATGATATCTGGTTGTGTGCAGGCTGGAAAGTCAACTGATGCCATGGAGTTGTTCTCCAAAATGAACTTGTGCGGACAAAAACCAGATGCCATTACTATCGCCAGTCTACTATCCGGGTGTTGCCAGCTTGGTTACCTGCGGATTGGAGAGATGCTTCATAGTTATATTCTGAGGAACAATGTGAAAGTGGAAGATTTTACAGGAACTGCTCTAATAGACATGTATAGCAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTACAGCATCAAGGATCCATGTTTGGCAACATGGAACTCCATCATATCAGGTTATAGTTTATACGGACTTGAGCATAAATCATTCGGTTGTTATTCTAAACTGCAAGAACAAGGATTAAAACCGGATAAAATCACCTTCTTGGGAGTTTTAGCAGCATGCACACATGGGGGACTTGTCTATTTAGGATTGGAATACTTCACTATCATGATAGAAGAGTATGGTTTGATGCCGACTCTGCAACATTATGCATGCATAGTTGCTCTATTAGGTAGAGAAGGCTTGTTCAAGGAAGCAATTGAATTTATAAACAACATGGAGATTCGGCCCGATTCTGCTGTATGGGGAGCTTTGTTAAGTGCTTGTTGCATCGAACAAGAGGTGAAGCTTGGGGAATGCTTggcaaaaaaattgtttttattgaatCAGAAAAATGGTGGATTTTATGTATTAATGTCAAATCTTTATGCCATTGTTGGGAGATGGGATGATGTAGCAAGGGTGAGGGAAATTATGAGAGATATTGGAGGAGATGGCTGTTCAGGTGTTAGTGTTATTGATGTGATTTCTGTTAAAGACTCTAATAGCAACTTATGCCAAAGTGAAGTCTATTTGAATACAAGCACTTGGCAGCATTTGTGTCTATATTGA 2151 0.3659 MLRNRPNLSLFHSLFQNAKSSLIIFRQILESNENPNAFTFSLLIKACLSSPSFVHGSTTAALQARQIQTQSLKRGINQFIHVNTSLIDLYMKLGFTCHARHLFDEMSFRDVVSWNVLICGYSQNGYLYNAFQLFVDMLREGFRPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKDGFCSDSHLNNALMSMYAKCDDFEASQLLFDEMVEKNVVSWNTMIGAYGQNGLFDKAILCFKEMLKEGFQPSSVTMMNLVSANALPETVHCYVIKCGFTNDASVVTSLVCLYAKQGFTDIARLLYKYYPTKDLISLTAIISSYSEKGDIDSAVECFNQTMQLDIKPDAVVLICVLHGITSPSHFAIGCIFHGYGVKSGLSNHCLVANGLISLYSRFDEIEAALSLFYDIREKPLITWNSMISGCVQAGKSTDAMELFSKMNLCGQKPDAITIASLLSGCCQLGYLRIGEMLHSYILRNNVKVEDFTGTALIDMYSKCGRLDYAEKVFYSIKDPCLATWNSIISGYSLYGLEHKSFGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFTIMIEEYGLMPTLQHYACIVALLGREGLFKEAIEFINNMEIRPDSAVWGALLSACCIEQEVKLGECLAKKLFLLNQKNGGFYVLMSNLYAIVGRWDDVARVREIMRDIGGDGCSGVSVIDVISVKDSNSNLCQSEVYLNTSTWQHLCLY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00954 716 PANTHER OS07G0578800 PROTEIN-RELATED 43 209 IPR045215 GO:0003723|GO:0009451
Tsu07g00954 716 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Tsu07g00954 716 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Tsu07g00954 716 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Tsu07g00954 716 TIGRFAM PPR: pentatricopeptide repeat domain 112 145 IPR002885 -
Tsu07g00954 716 TIGRFAM PPR: pentatricopeptide repeat domain 409 443 IPR002885 -
Tsu07g00954 716 PANTHER OS07G0578800 PROTEIN-RELATED 299 715 IPR045215 GO:0003723|GO:0009451
Tsu07g00954 716 PANTHER OS07G0578800 PROTEIN-RELATED 203 300 IPR045215 GO:0003723|GO:0009451
Tsu07g00954 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Tsu07g00954 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 299 715 - -
Tsu07g00954 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 203 300 - -
Tsu07g00954 716 Pfam E motif 627 686 IPR046848 -
Tsu07g00954 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 43 209 - -
Tsu07g00954 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Tsu07g00954 716 Gene3D Tetratricopeptide repeat domain 171 262 IPR011990 GO:0005515
Tsu07g00954 716 Gene3D Tetratricopeptide repeat domain 263 358 IPR011990 GO:0005515
Tsu07g00954 716 Pfam PPR repeat 309 332 IPR002885 -
Tsu07g00954 716 Pfam PPR repeat 381 406 IPR002885 -
Tsu07g00954 716 Pfam PPR repeat 511 540 IPR002885 -
Tsu07g00954 716 Pfam PPR repeat 482 505 IPR002885 -
Tsu07g00954 716 Gene3D Tetratricopeptide repeat domain 15 166 IPR011990 GO:0005515
Tsu07g00954 716 Gene3D Tetratricopeptide repeat domain 507 712 IPR011990 GO:0005515
Tsu07g00954 716 Gene3D Tetratricopeptide repeat domain 363 506 IPR011990 GO:0005515
Tsu07g00954 716 Pfam PPR repeat family 210 251 IPR002885 -
Tsu07g00954 716 Pfam PPR repeat family 409 455 IPR002885 -
Tsu07g00954 716 Pfam PPR repeat family 109 155 IPR002885 -
Tsu07g00954 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Tsu07g00954 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Tsu07g00954 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00954 Tsu-Chr7 7861510 7863660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00954 36 689 Glycoside Hydrolase AT3G49170 31.602 2.25e-105 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00954 - - gmx:100787089 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00954 07 7861510 7863660 Tsu07g00954 07 7861510 7863660 ECH