Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00909 ATGTCGAACCGCTTCTATCCCGATCCACTCGATAATGATACGCCGTCGTTTTCACCTCGATCGGGGTATATTCGTTACTTATCATCGCTATCACAAAACCAGAACCAGAACTTGAATCAAAACCCTTGTAATGAGGTTCGATTCACTTCTCAAATTCAAAACCCTAATAATGAGAATCAAACCCTAGAAGATGTTTTTTCTCGTCTTtctgttaataataataatcaatctTATGGTTATGGTGTCAATTCTGTTGTTGATTCCCCTTATTATAACTATGGGATTCAAGCTGGTTTCAATAGACCTGTTAATGTTAGTGTTAGGAATATTGTTAATGGCGGCGGAGAAATTACTACTACTCCGCCGCCGCAGAATCTTTTTATGAGGGCTGATAATAGAGATGGTTATGGGTTTAATGGGTTTAATAATGATTATGCTCTTTTATCTAGGCAGAGTAGTGGTTATGGTAATGGGGGTGGTGTTAGTGTTGGCAGTGTTGGTGGTGATGAATTGCTTGGAAAGATTcaatttggtttgatgaatgaatCCTCTGTGCAGAATGTTTCTTGGGGGGTTAATGATGTTGTCAATGTGAATAATGTGAATGTCAataatgtgaatgtgaatggaaggaATTCACATTGGTTTGATGATTTTCGTGGGAGGGTTTATGCAATGGCTAAAGATCATCATGGAAGTAAGATTTTACAggatttgattgataattttaaagcTGAAGCTGTTTATTACATTTTCTTGGAGCTGATCAGTCATATTGTTGAGCTCATGCCTGATCCAGCTGGTAGTCAGGTTATTCAAAAGATGGTTGGATTTTGCAATCAAGATCAACAGACTAGGATTGTTCTACTCATCACTCACCATAGTGTTCAGTTGATCAAAATTTGTCTTAATCTTCATGGATCTCGGGCTGTTGAGAAGCTGTTGGAGAAGATTACTACCAGACAACAAAGAACTCTAATTATGTCAGCTTTGACTCCAAGTGCTATTTTGATGTCTAAGGATATAAATGGTCACCGTGTGGTTCTCTATTGTTTGAAAAGTTTCCCACAGGATGAAACTAAGCAATTCCTGTATCTTCTTGCAAAGAACACTTTGTCGATTGCAAGAGATAAGACTGGATGTTGTGTGCTGCAGTATTGCGCTAGCCATACTCAAGGAGAAGCTAAGGATCACCTGATCAATGACGTTGTTCTTAATGCACCACTATTAGCAGAAGATTGTTACGGCAACTATGTGATTCAACATCTTTTGTCTTTGAAGATACCCAGAGTCTCAAACAACCTCTTCATGCAGCTTGAAGGACAATTTATATATCTTGCCTGCAATAAATATGGCAGTAATGTAGTGGAGAAGTTTTTTCAAGACTCAGGAGTGAATCTATCTACACAAATCATTGTGGAGTTGCTCCGTGATCCAAATGTATCAAGGCTCCTTGTGGATCCATATGGAAACTATGTCATCAGTTCAGCATTGACAAGATTTAAGGGTTCTCCTGCCATTAAGAATGCCCTGATGCAGCTGATCCAAACTAATTCTCAAATGATGCGAACCAATATCATGACCATTGATGACAAGCTCCTTCGTGATTCCTCAAAGCAAGCTTTTGTTTTCCATGGCAAGGCCATAACAATTGTTACAAACTTGTTAGTACTGGTTCCGATTTTGCCTGCTCCATCCTCAGATTCTGGTTGA 1713 0.373 MSNRFYPDPLDNDTPSFSPRSGYIRYLSSLSQNQNQNLNQNPCNEVRFTSQIQNPNNENQTLEDVFSRLSVNNNNQSYGYGVNSVVDSPYYNYGIQAGFNRPVNVSVRNIVNGGGEITTTPPPQNLFMRADNRDGYGFNGFNNDYALLSRQSSGYGNGGGVSVGSVGGDELLGKIQFGLMNESSVQNVSWGVNDVVNVNNVNVNNVNVNGRNSHWFDDFRGRVYAMAKDHHGSKILQDLIDNFKAEAVYYIFLELISHIVELMPDPAGSQVIQKMVGFCNQDQQTRIVLLITHHSVQLIKICLNLHGSRAVEKLLEKITTRQQRTLIMSALTPSAILMSKDINGHRVVLYCLKSFPQDETKQFLYLLAKNTLSIARDKTGCCVLQYCASHTQGEAKDHLINDVVLNAPLLAEDCYGNYVIQHLLSLKIPRVSNNLFMQLEGQFIYLACNKYGSNVVEKFFQDSGVNLSTQIIVELLRDPNVSRLLVDPYGNYVISSALTRFKGSPAIKNALMQLIQTNSQMMRTNIMTIDDKLLRDSSKQAFVFHGKAITIVTNLLVLVPILPAPSSDSG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00909 570 ProSiteProfiles Pumilio RNA-binding repeat profile. 254 289 IPR001313 GO:0003723
Tsu07g00909 570 SUPERFAMILY ARM repeat 213 525 IPR016024 -
Tsu07g00909 570 ProSiteProfiles Pumilio RNA-binding repeat profile. 438 474 IPR001313 GO:0003723
Tsu07g00909 570 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 197 541 IPR033133 GO:0003723
Tsu07g00909 570 PANTHER PUMILIO HOMOLOG 15 185 528 - -
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 258 289 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 338 364 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 298 330 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 442 476 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 410 424 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 372 402 IPR001313 GO:0003723
Tsu07g00909 570 Pfam Pumilio-family RNA binding repeat 222 256 IPR001313 GO:0003723
Tsu07g00909 570 ProSiteProfiles Pumilio RNA-binding repeat profile. 218 253 IPR001313 GO:0003723
Tsu07g00909 570 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 185 528 - -
Tsu07g00909 570 ProSiteProfiles Pumilio RNA-binding repeat profile. 365 401 IPR001313 GO:0003723
Tsu07g00909 570 Gene3D - 203 537 IPR011989 -
Tsu07g00909 570 ProSiteProfiles Pumilio RNA-binding repeat profile. 290 328 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 293 328 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 476 513 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 366 401 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 254 289 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 330 365 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 218 253 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 402 437 IPR001313 GO:0003723
Tsu07g00909 570 SMART pum_5 438 474 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00909 Tsu-Chr7 7404117 7408535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00909 - - mtr:MTR_3g102650 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00909 07 7404117 7408535 Tsu07g00909 07 7404117 7408535 ECH