Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00823 ATGGCGGAAGAAGCACAATATACCCTAAAACGCAAATACGACGACCAACCTTCCGCCATCGACATCAATCTCGAAGTCGCTAACGCCAAACTAAAAGCTCAAGAAACCGCCGCTCGTCTTCTCAGTGCCACCGCCGCTCCACCACTTCAATTCGATCCAAAACGAACTAAATCTGATAATGGTGCTCCACAATCTGGATTCGATTCTTATGATTCGAAACCTCAATACTCTTCAGCTTCTTATGGTAATACCAATTCTTACAGTTCTAGTAAGAAGATCGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGTGGTGAAACTATTAAGTATCTTCAGTCACAATCTGGTGCTAAAATTCAAGTTACTCGTGATATGGATGCTGACCCTAATTCTACAGTGAGGATGGTTGAACTTATGGGTACTTCTGATGCTGTTGCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGTGGTGGTACTAGGCGGATGGCTGCACAATCTGGAGGTGATGAATTTTCGATGCAAATACCAAACAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAGCATGCAAGCTACAACTGGAGCACGGATTCAGgtGATACCTTTGCATCTTCCCCCGGGTGATACATCAACAGAAAGAACATTAAAAATTGATGGGGCCCCTGAGCAAATTGAATCAGCAAAGATATTGGTTAATCAAATCCTCACCGGTGAGAATCGTCTCAGAAATTCAGGGAACTCTGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCATCTAGCTGGGCTCCTCCTGCTGCTCCTGCGCAACAACCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGCCCATCACCCCAGTATAACATGCCTCAGCCCCCATATGCTGGCTACCCTCCCCAGCAAGATGGTGGATACTCTGCCAATTGGGACCAGTCCACTGTACCATCACACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAATCAACAACCCCAGCAACAGCAAAATTCCGGGGTCCCTGCACAGCCAGCTGATGGATCTACTTACAATTACAGTCAGCCACCTTCCTCTGGTTATACCCAACCGGGACAGGGTTATGGTCAGGAAAGCTATGCTGCATATAATGCACAACAACAATCAGGGTATGCTCAGCCACCAACATATGAGCAGCAACAGGGTTATGGCTCAGCTACCGGCTATGGTAGTGGGAGTAACCCAACTCAAGAAGGGCACACTTCCAACTATGCATCACAAGGAGATTCAACCCAAACTACCCAACCCTCTACCGTTCCCCAGCAAGGCTATGCTACCAACCAACAAGGAACTCCTCAACCAGGTTATGGGGTAGCTCCTACCTCCCAACCGACCTATGGCAATCAACCACAGTCTGGTTATGGACCAGGTTATGGTGCCCCTCCATCTCAAAAGCCAAGTGGCAATCCACCTGTTTATGGTCAAACACAGTCACCTAGCACAGCGGGAGGCTATGCTCAGTCAGGATATTCAACCCAACCCCCACCTTCTGGATATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTTCTCAATCATATGGTGCTCCCCAAGGTGGCCAACCTGGCTACGGCCAGACTCCACCATCATATGGAAACAGTTCCTATGGTGCTGGTTATACTCAGGCTCCAGCATATTCTAGTGATGGAGCAACTGCACAGCCTGTTCAACAGGGTGGTGTTGCCAAAGTGTCGCCCAAGagttaa 1824 0.4775 MAEEAQYTLKRKYDDQPSAIDINLEVANAKLKAQETAARLLSATAAPPLQFDPKRTKSDNGAPQSGFDSYDSKPQYSSASYGNTNSYSSSKKIEIPNGRVGVLIGKGGETIKYLQSQSGAKIQVTRDMDADPNSTVRMVELMGTSDAVASAEKLINEVLAEAEAGASGGGTRRMAAQSGGDEFSMQIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIDGAPEQIESAKILVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPAQQPGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQDGGYSANWDQSTVPSHQQSTHASGYDYYNQQPQQQQNSGVPAQPADGSTYNYSQPPSSGYTQPGQGYGQESYAAYNAQQQSGYAQPPTYEQQQGYGSATGYGSGSNPTQEGHTSNYASQGDSTQTTQPSTVPQQGYATNQQGTPQPGYGVAPTSQPTYGNQPQSGYGPGYGAPPSQKPSGNPPVYGQTQSPSTAGGYAQSGYSTQPPPSGYAQPELGTQRAPVQPGYGSQSYGAPQGGQPGYGQTPPSYGNSSYGAGYTQAPAYSSDGATAQPVQQGGVAKVSPKS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00823 607 Pfam KH domain 184 249 IPR004088 GO:0003723
Tsu07g00823 607 Pfam KH domain 91 157 IPR004088 GO:0003723
Tsu07g00823 607 MobiDBLite consensus disorder prediction 44 92 - -
Tsu07g00823 607 ProSiteProfiles Type-1 KH domain profile. 88 155 - -
Tsu07g00823 607 CDD KH-I 182 248 - -
Tsu07g00823 607 MobiDBLite consensus disorder prediction 502 533 - -
Tsu07g00823 607 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 41 591 - -
Tsu07g00823 607 SMART kh_6 179 253 IPR004087 GO:0003676
Tsu07g00823 607 SMART kh_6 87 160 IPR004087 GO:0003676
Tsu07g00823 607 ProSiteProfiles Type-1 KH domain profile. 180 248 - -
Tsu07g00823 607 MobiDBLite consensus disorder prediction 257 277 - -
Tsu07g00823 607 MobiDBLite consensus disorder prediction 257 607 - -
Tsu07g00823 607 CDD KH-I 90 155 - -
Tsu07g00823 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 89 164 IPR036612 GO:0003723
Tsu07g00823 607 MobiDBLite consensus disorder prediction 57 92 - -
Tsu07g00823 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 254 IPR036612 GO:0003723
Tsu07g00823 607 MobiDBLite consensus disorder prediction 324 485 - -
Tsu07g00823 607 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 41 591 - -
Tsu07g00823 607 MobiDBLite consensus disorder prediction 544 600 - -
Tsu07g00823 607 Gene3D K Homology domain, type 1 80 177 IPR036612 GO:0003723
Tsu07g00823 607 Gene3D K Homology domain, type 1 178 277 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00823 Tsu-Chr7 6726421 6730849 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00823 K13210 - gmx:100813135 641.343