Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00809 ATGGCTTGTAGGCGTGTGATAACGCAGCTCCGTTATTCAGTCCACCATGCTCCAAAGCAGgTTGAAAGGCGTCAATCAGAGTTTGGAAAGGTCAAAGGTTTATTGAGTAGAAACTATTTATCTCATAATAAGCTTCAAGAATGTACATGGGATAGACTTTTCTTCTCGCAATCCAGATATCTACAAAATCTTGCCCAACCACTGTGTGATTCATCTGAAGCCAAGGATGCCTCTTATCTCAAAGAACTTTACTGTCAAAGTGATCCTGAAGCCGTGATTAGAGCATTTGAAAGTCAACCATCTCTGCATACAAATCGTCTATTTTCTGAATATGTTAAAGCATTAGTAAAAGTTGGTAGGCTAGCTGAAAgtgaatttttgaagactttGCTACGAGGTATTTCTAATTCAGAGAGAAAGGAAGAAAGTAGTATAGGTGGCCTTGCTGCTCTTAGAAATGTGGGAGAACCTAAAGAAGATGGAATTCTTGGATCTTCATGTGCTCCTATTGATATGGTTGACGCATTAGAAGGTGAAAATGTCAAAGAGCAGCTATGGCGTACAATTTGGTTTATTGCAGCGGCCTTCCTCTTGATTTGTAGTGCAGGAGCTCTCATTGTGCATAAAGGAATTAGTAAAGAAGTGAAACCCAATGTGGAGACAAGTACCAAATTGAGCGCCGTGAAAGGTGTTGATGAGGCAAAGGCTGAACTTGAAGAAATTGTTGATTACCTAAGAGATCCCGAGCGCTTTACTCGTCTTGGTGGCAAATTCCCAAAAGGTGTTTTACTTGTTGGCCCGCCTGGCACTGGTAAAACAATGTTGGCAAGAGCTATTGCTGGAGAGGCGGGGGTTCCTTTCTTCTCAAGCAGTGGAAGTGAATTTGAAGAGATGATTGTTGGTGTTGGTGCACAAAAGGTGAGAGATCTTTTTGCCGCTGCAAAAAAGCAGTCACCTTGTATAATCTTTATTGATGAGATTGATGCTATTGGTGGAAGTCGAAATCCAAAGGACCAAATGTACATGAAGACGTCTTTAAATCAATTGCTTGTTGAGTTAGATGGATTCAAACAAAACGAAGACATAATTGTAATTGGTGCTACTAACCTTCCGGAGTCACTAGATAAGGCTTTGGTGAGACCTGGGCGATTTGATCGCCGTGTTGTTGTTCCCAATCCAGATGTAGAAGGACGGCGACAGATTTTGGAATTTCACATGTCAAAGGTTCTGAAGGCAGATGATGTTGATCTTATGATCATTGCTCGGTATACAACTGGGTTCTCCGGTGCTGACCTTGCAAACTTAATTAATGTTGCAGCCCTGCGAGCTGCAAAGAATGGCGCCAAGGCCGTGAGCACACATGATTTAGAGTTTGCACGGGACAAGATTTTGATGGGAAGTGAACGCAAGTCAGTAGTTATATCTAAGAAGTCAAGAACGAAAACTGCTTTCCATGAGGGTGGCCATGCCTTAGTGGCAATTTATACTGATGGTGCACTACCTGTTCACAAGGCAACTATAGTTCCTCGTGGGGTGGCTCTTGGCATGGTTTCTCAACTCCCTGACAAGGACCAGACCAGTCATTCCCGTAAACAGATGCTTGCCAAGCTCGATGTTTGGATGGGAGGTCGAGTTGCTGAAGAGCTAATTTTCGGAGAAAGTGGAGTTACTTCTGGTGCATCCTCAGATCTTACTAAGGCAACTAATTTGGCCAGACAAATGGTTACTAAATACGGTATGAGTGCTGAAGTTGGACCGGTCATTCACAATTATCATGATAATGGGAGAAGTATGAGTTCAGAAACTAGGTTGCTAATTGAGAAAGAAGTGAAGAACTTGCTTGAGAGAGCTTACAACAATGCAAAAATTATTCTAACCACTCATAAAAAGGAGCTTCATGCGCTTGCAAATGCTCTTTTGGAGCACGAGACACTTACAGGAAGTCAGATAAAGGATTTACTTGCAAAAGTCAAATCTCGACCGAAACAGCCACAATCTTTTGTAGTCAAAGCTCCGGGAAGTTCACAGTCCAACACAACAGCTACTGAGGCATCCGCGGCCTCTGCAGCTGCAGAAAAGGCTCAAGGGATTGCCCCAGTAGGACCTTAG 2109 0.4263 MACRRVITQLRYSVHHAPKQVERRQSEFGKVKGLLSRNYLSHNKLQECTWDRLFFSQSRYLQNLAQPLCDSSEAKDASYLKELYCQSDPEAVIRAFESQPSLHTNRLFSEYVKALVKVGRLAESEFLKTLLRGISNSERKEESSIGGLAALRNVGEPKEDGILGSSCAPIDMVDALEGENVKEQLWRTIWFIAAAFLLICSAGALIVHKGISKEVKPNVETSTKLSAVKGVDEAKAELEEIVDYLRDPERFTRLGGKFPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSSSGSEFEEMIVGVGAQKVRDLFAAAKKQSPCIIFIDEIDAIGGSRNPKDQMYMKTSLNQLLVELDGFKQNEDIIVIGATNLPESLDKALVRPGRFDRRVVVPNPDVEGRRQILEFHMSKVLKADDVDLMIIARYTTGFSGADLANLINVAALRAAKNGAKAVSTHDLEFARDKILMGSERKSVVISKKSRTKTAFHEGGHALVAIYTDGALPVHKATIVPRGVALGMVSQLPDKDQTSHSRKQMLAKLDVWMGGRVAEELIFGESGVTSGASSDLTKATNLARQMVTKYGMSAEVGPVIHNYHDNGRSMSSETRLLIEKEVKNLLERAYNNAKIILTTHKKELHALANALLEHETLTGSQIKDLLAKVKSRPKQPQSFVVKAPGSSQSNTTATEASAASAAAEKAQGIAPVGP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00809 702 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Tsu07g00809 702 Pfam AAA+ lid domain 414 457 IPR041569 -
Tsu07g00809 702 SMART AAA_5 258 394 IPR003593 -
Tsu07g00809 702 PANTHER METALLOPROTEASE M41 FTSH 18 686 - -
Tsu07g00809 702 Gene3D - 207 392 IPR027417 -
Tsu07g00809 702 MobiDBLite consensus disorder prediction 661 702 - -
Tsu07g00809 702 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 205 654 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g00809 702 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 18 686 - -
Tsu07g00809 702 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 660 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g00809 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 462 IPR027417 -
Tsu07g00809 702 Pfam Peptidase family M41 473 653 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g00809 702 Pfam ATPase family associated with various cellular activities (AAA) 262 391 IPR003959 GO:0005524|GO:0016887
Tsu07g00809 702 Gene3D - 393 466 - -
Tsu07g00809 702 MobiDBLite consensus disorder prediction 668 686 - -
Tsu07g00809 702 Gene3D Peptidase M41 467 663 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g00809 702 CDD AAA 229 391 - -
Tsu07g00809 702 SUPERFAMILY FtsH protease domain-like 473 662 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00809 Tsu-Chr7 6629889 6635321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00809 50 654 Miscellaneous Gene Families AT5G53170 48.357 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00809 K08955 - tcc:18588072 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00809 07 6629889 6635321 Tsu07g00809 07 6629889 6635321 ECH