Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00797 ATGGCGGATCCCTATTACCCATACCTAACTCCTGCTACTTCCGACGCAAGCTTTGCCAGAAGTAGCTATGCTGGTTACATTCCATCCGAGGCACCATCATTGGCTTCTTCTCATCCTAAATCTACTGATTTTCCGGGCTACGGATCAGATTACGCGCATAAAGAAGGGAGTTTGTTTCGGATGGAGCCATATAGTGTTGATGACACTAGGGGATCTAGAGTTCACTCCGAACATAATGTTACAAGTTATTCTCCTCTCGAAGATCCTGGTTTAAGTACGAAAAGAGATATTCCTTTGGGCGTTAATCCAAGTGTTCCTGATGCAATTGCAAACAATGAAAGATTAATCTCTAAAAGCAGCTATGACCCCGTCCCAGTTTCAGCTGCGGAATCAAACATTTTGTTTGTAGGTGGGCTTCCAAAAGACTGCACTAGAAGGGAAGTTGGTCATCTTTTTCGTCCCTTTATCGGCTATAAGGATATCAAACTTGTTCACAAGGAGCCAAGACGAAGTGGGGACAAGgctatgattttttgttttgttgagtTTAATGAACCCAAATGTGCTCTCACCGCTATGGAAGCTCTGCAagGCTACAAGTTTGACGATAAAAAACCTGATTCACCAACTTTAAAAATCAAGTTTGCGCACTTTCCTTTCCGCCCGCCAACCGATGATGGACTATAA 687 0.4207 MADPYYPYLTPATSDASFARSSYAGYIPSEAPSLASSHPKSTDFPGYGSDYAHKEGSLFRMEPYSVDDTRGSRVHSEHNVTSYSPLEDPGLSTKRDIPLGVNPSVPDAIANNERLISKSSYDPVPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKAMIFCFVEFNEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDDGL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00797 228 CDD RRM_RBPMS_like 132 214 - -
Tsu07g00797 228 SUPERFAMILY RNA-binding domain, RBD 95 205 IPR035979 GO:0003676
Tsu07g00797 228 MobiDBLite consensus disorder prediction 69 92 - -
Tsu07g00797 228 Gene3D - 127 218 IPR012677 -
Tsu07g00797 228 PANTHER PROTEIN COUCH POTATO 8 221 - -
Tsu07g00797 228 SMART rrm1_1 133 214 IPR000504 GO:0003723
Tsu07g00797 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 205 IPR000504 GO:0003723
Tsu07g00797 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 218 IPR000504 GO:0003723
Tsu07g00797 228 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00797 Tsu-Chr7 6526447 6530245 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00797 - - lang:109343815 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00797 07 6526447 6530245 Tsu07g00797 07 6526447 6530245 ECH