Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00752 ATGGCGAATTTGGATCAAACTCAATTCAGCGACACCGAAGACGATTTCGAATTTCCTCTCACTCAAACACCATCTCTTCAACCTCTTTCAGATTCCAATACTCAACGACCTTCCAAGAAACCCAAAACCAAAACGACACCGTTTCCTGGCAAAGAAAACATTCCTCCTTTCGATGATAACTGTAGTTTGGATTTCGTTCCTTCCACATTAGATCCTGATTCTAATACCGTCTGTTCTTCTTCTGTTTCGGAATCGAAACTGAAAAAGATTAACAAACgcgcttattttcataattcatTAGAGTCTAGGTTAGTTAAGTCGAGAACGAATGTTTTTGATTATGGAGAGTCTGGTTCGAAGGTGAATTTGGATAGCTCTGTTGATTGTCCTCTATGTGGTGTTGATATTTCTAATTTAACAGAGGAAGAGCGTTATCTTCATACCAATCATTGTCTCGATAAAGCCGGAGAAGATGTTGCTCTTCCTAATGATGATGTGGGAGCTCAATCTGCAGCTAAAGTCTCTCCTGTTGTTGATTGGCTACGCGATCTCGGTTTAGCTAAATATGAAGAAGTTTTCGCCAGGGAAGAAGTTGATTGGGACACTCTGCAATGGCTGACAGAAGAGGATCTCTTAAACATGGGCATAACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCCCTGTCAGAACTTAGAAGAGGATGTGTCTCTTCAAGTTCAAATGAGAAACATGGGGATGCTGGGGTCGACCCTAGAAAGGTTAGAAACCAGAAAGGAAAATCACAACATGACAAATCTGAAAGAAAAGCCAACGAAAATGTTAAACCAGCAGCAAACAAATTAATCACCGAATATTTTCCGGGATTTGTTACCAAAGAGAAGAAAGCATCTGCCCCTTCTGCAGAACAACCTGAAACGAAAAACAGTGACTTGGTTTCTGATCGAAAGCGCAAAGCCAAAGATATATCCACAAGTTCAAAGATTCGTGATGTTCCTAAATGGTGTGCCATACAAGGAACACCTTTCCGAGTGGATGCTTTCAAATACCTAAGAGGAGATTGTTCGCACTGGTTTCTCACACACTTCCACATGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTTGTAAATATGAACATGGGAATTCCATATGATAAATTACACATTTTGCCTCtaaaccaaaaaattgaaatagctGGTATCGGTGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATGATACTCTTTGAACCTCCGAATAGTAAGGCGGTACTTCACACAGGTGATTTTCGCTATAGTGAAGAAATGGCAAACAACCTTTTCCTGCGAACGTGTCCTATTGACACTTTAATTCTTGATACCACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGATGCCATTCAAGCAGAAACTTTTAATCCCCAGACTCTTTTTCTTATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCACTTCGCAAAAAGGTTTACGTGACTGCAGCAAAGCTACGCCTTTTAAAATGTTTGGAATTTACAGAGGAGGATATGCAGTGGTTTACTTCCAATGAGCATGAAAGCAACATTCATGTTGCCCCTATGTGGACACTTGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTAATAGTTGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAGAAGAAGTCTCCCGGAAGAAGGTGGCAGCAGGGTACTGTTATAAGGTATGAAGTTCCTTACAGTGAGCATTGCAGCTTTACAGAACTTAAAGagtttgtaaattttttatctcCCAAAAATATTATACCAAGTGTGAATAATGATGGACCCGAATCTGCCGACGCAATGGTTACTTCTCTCATGTCAACTTGA 2001 0.3958 MANLDQTQFSDTEDDFEFPLTQTPSLQPLSDSNTQRPSKKPKTKTTPFPGKENIPPFDDNCSLDFVPSTLDPDSNTVCSSSVSESKLKKINKRAYFHNSLESRLVKSRTNVFDYGESGSKVNLDSSVDCPLCGVDISNLTEEERYLHTNHCLDKAGEDVALPNDDVGAQSAAKVSPVVDWLRDLGLAKYEEVFAREEVDWDTLQWLTEEDLLNMGITALGPRKKIVHALSELRRGCVSSSSNEKHGDAGVDPRKVRNQKGKSQHDKSERKANENVKPAANKLITEYFPGFVTKEKKASAPSAEQPETKNSDLVSDRKRKAKDISTSSKIRDVPKWCAIQGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTKSFNHGKIYCSSVTARLVNMNMGIPYDKLHILPLNQKIEIAGIGVTCLDANHCPGSIMILFEPPNSKAVLHTGDFRYSEEMANNLFLRTCPIDTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPQTLFLIGSYTIGKERLFLEVARSLRKKVYVTAAKLRLLKCLEFTEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTVIRYEVPYSEHCSFTELKEFVNFLSPKNIIPSVNNDGPESADAMVTSLMST 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00752 666 MobiDBLite consensus disorder prediction 246 275 - -
Tsu07g00752 666 CDD SNM1A-1C-like_MBL-fold 324 476 - -
Tsu07g00752 666 MobiDBLite consensus disorder prediction 1 57 - -
Tsu07g00752 666 MobiDBLite consensus disorder prediction 1 42 - -
Tsu07g00752 666 CDD SAM_superfamily 177 231 - -
Tsu07g00752 666 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 127 661 - -
Tsu07g00752 666 ProSiteProfiles SAM domain profile. 172 235 IPR001660 GO:0005515
Tsu07g00752 666 Gene3D - 479 626 - -
Tsu07g00752 666 SUPERFAMILY SAM/Pointed domain 173 234 IPR013761 -
Tsu07g00752 666 MobiDBLite consensus disorder prediction 295 324 - -
Tsu07g00752 666 SMART SAM_4 169 235 IPR001660 GO:0005515
Tsu07g00752 666 Pfam DNA repair metallo-beta-lactamase 547 651 IPR011084 -
Tsu07g00752 666 Gene3D - 168 242 IPR013761 -
Tsu07g00752 666 MobiDBLite consensus disorder prediction 236 275 - -
Tsu07g00752 666 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 127 661 - -
Tsu07g00752 666 Gene3D - 338 648 IPR036866 -
Tsu07g00752 666 MobiDBLite consensus disorder prediction 309 324 - -
Tsu07g00752 666 Pfam SAM domain (Sterile alpha motif) 173 233 IPR001660 GO:0005515
Tsu07g00752 666 SUPERFAMILY Metallo-hydrolase/oxidoreductase 343 647 IPR036866 -
Tsu07g00752 666 Pfam Beta-lactamase superfamily domain 359 478 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00752 Tsu-Chr7 6216053 6221600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00752 175 229 Glycosyltransferase AT3G07170 49.091 5.22e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00752 K15340 - gmx:100816321 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00752 07 6216053 6221600 Tsu07g00752 07 6216053 6221600 ECH