Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00712 ATGGGTCACGTTGGTTCAAGCAAAGACGCAAACAAACCTAACATCAACGATTTTGATCTAGAAGACGATTACACTCTCGACACAGAAATGGAAGACATTGACCTAGACGAAGATCCGTCAACAAATTCAGAAATCCTCAACGAATTAAATCCTGATGCGATCAAATTTTTCTGCAAAAAAGCTTCTGTGATGTTCTTCGATGAATATGGTTTAATCAGTCACCAAATCAACTCGTATAATCAATTTATCAGTTCTGGTCTTCAAGAAGCTTTCAATTCGTTCGGAGATCTCACTGTTAATCCTGATTTTAATCCTTCTAAGAAAGGAGATAGTGAACATTATCGTTATGCTACTGTGAAATTTGGAAATGTAACCCTTGATCGACCTAAGTTTTGGTGTGGTGAAGGTAATGCTCAAGAGTTGAAGATGCTTCCTAGACATGCTCGTTTGCAGAGAATGACTTATGCTTCTAAAATGAAAGTTGATGTTCAAGTTCAGGTTTATATTCCGAAGAAGGTTCGGAGTGATAAGTTTAAGACTGGGAAGGAGGAGTATATTGATAAGGAGATTATCATggatgagaagagagaaataactATTGGGAGACTTCCTGTTATGGTTATGTCTGATTTATGTTGGATGAGTGAAGTTGAAAAACGTGATTGTGAATTTGACCATGGAGGCTACTTTCTCATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCATATTGGGCAGTTGCATTCAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAAAATTCCACTTATGAAGGAATTAAAAACGGAGAGAAGATGCTGACAGTATATTTTCTGTCTGTTGAGATTCCTGTATGGATACTGTTTTTTGCTCTTGGCGTCACTTCAGATAAAGAGATTGTTGATCTCATTGATTATGAAGAGGAAGATGGAAGAGTTCACAACATTCTCCTTGCATCCATTCTGGAGGCTGATGAGAAGTGCAAAACATTTCGCAGGGGAAAGAATGCGCTTCTTTTCGTAGAGGAACGTGTAAAAGGTGTCCAATATCCACCAATTGAATCTATTGATGAGTGCCTTAACATCTATGTCTTTCCGAGCATTAAAGGGTTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAAGTTCTCTTGCTGGCATATACTGGCCGCCGAAAAACTGATAACAGGGACGACTTTCGAAATAAGAGGCTTGAGTTGGCTGGCGAGCTGCTCGAGCGTGAGATTAAAGTACATTTTGCACATGCTCGGAAGCGGATGGGGAAGGCTCTGCAGAGAGATCTTTATGGAGATCGAGATGTTCGTCAAATTGAGCACTATCTTGATGCTTCAATTATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCATGGACACATCCTTTTAAAAGAATGGAAAGGATTTCTGGCGTGGTTGCAACTCTTGGACGAACAAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAGGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCACATCCTTCACACTGGGGTAAGGTTTGTTTCCTGTCTACACCAGATGGTGAAAATTGTGGACTGGTAAAAAATTTGTCTGTCACAGGAGTGGTAAGTACCAATGTGACAGAATCGATACTTCCTCAGCTGTTCGATTGTGGGATGGAAGAACTTGTTGATGATACTATCACTGCTCTTGGAAGAAAAGACAAAGTCTTCCTAAATGGGGACTGGGTTGGAGTATGTTCAGATTCCACATCATTTGTGGCAGAGCTACGAAATAGACGACGGAAAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGATCAAAATCAACGAGAAGTGCGTATATTATCTGATGCAGGAAGGATTCTCCGTCCACTCTTGTTAGTTAGTAATCTGCTCAAGATTAAAGGATCTAAATCGGAGCATAAATCTTTCAAGTCCTTACTGGATAATGGCGTGATTGAGCTGATTGGTCctgaagaagaagaggatttCAAGACTGCTTGGGGTGTTCAGTATTTATTTGGCAAAGAGGGAAAGTCTTCTGTGAAGTACACACATTGTGAGCTGGATATGTCATTCTTGTTGGGTCTAAGCTGTTCACTTGTTCCATTTGCAAATCATGACCATGCAAGGAGAGTGTTGTATCAATCCCAGAAGCATTCTTCACAGGCTATTGGCTATTCTACGACAAACCCCGATATAAGAGTTGATGCTTTGTCTCACCAATTATTTTATCCTCAAAGACCACTTTTTCAGACGATGGCATCTGATTGTCTTGGAAAACCTGGATATCTAGGTCCAAGTAAAGTTCTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTAGCTGTCAATGTACATCTCGGATATAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTCTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCTGAAATTGAAAATAAGGAATCTTCTGATAAGAGAAAGAAACCTGAAGACATCGTAAACTTTGGAAAGATACAGAGTAAAATTGGTCGAGTTGATAGCCTTGATGAGGATGGATTTCCATTTGTTGGCGCGAATTTGCAGAGTGGTGATATTATTATTGGGCGGTGTGCTGATTCAGGGACAGACCAcagtataaaattaaaacacaccGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCTAATGATGAGGGGAAGAATTTTGCTACTGTTTCGTTAAGACAGGTAACTGGTGGAACCAAGAACTACTTTAATGATAATGCATGTTGCCTTGTGGATAAATTTTTATGGGTTACTGCATTGGACAAACATACTGAACATGGATTTTAA 2937 0.3926 MGHVGSSKDANKPNINDFDLEDDYTLDTEMEDIDLDEDPSTNSEILNELNPDAIKFFCKKASVMFFDEYGLISHQINSYNQFISSGLQEAFNSFGDLTVNPDFNPSKKGDSEHYRYATVKFGNVTLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVQVQVYIPKKVRSDKFKTGKEEYIDKEIIMDEKREITIGRLPVMVMSDLCWMSEVEKRDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVENSTYEGIKNGEKMLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYEEEDGRVHNILLASILEADEKCKTFRRGKNALLFVEERVKGVQYPPIESIDECLNIYVFPSIKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGVVSTNVTESILPQLFDCGMEELVDDTITALGRKDKVFLNGDWVGVCSDSTSFVAELRNRRRKNELPHQVEIKRDQNQREVRILSDAGRILRPLLLVSNLLKIKGSKSEHKSFKSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGYSTTNPDIRVDALSHQLFYPQRPLFQTMASDCLGKPGYLGPSKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSDKRKKPEDIVNFGKIQSKIGRVDSLDEDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVTGGTKNYFNDNACCLVDKFLWVTALDKHTEHGF 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00712 978 MobiDBLite consensus disorder prediction 1 20 - -
Tsu07g00712 978 Pfam RNA polymerase Rpb2, domain 4 597 657 IPR007646 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 Gene3D - 64 245 - -
Tsu07g00712 978 Pfam RNA polymerase Rpb2, domain 6 728 940 IPR007120 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 39 946 IPR015712 GO:0003899|GO:0006351|GO:0032549
Tsu07g00712 978 Gene3D - 411 584 - -
Tsu07g00712 978 Pfam RNA polymerase Rpb2, domain 3 501 560 IPR007645 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 Gene3D RNA polymerase Rpb2, domain 2 254 410 IPR037034 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 56 944 - -
Tsu07g00712 978 CDD RNA_pol_B_RPB2 71 945 IPR015712 GO:0003899|GO:0006351|GO:0032549
Tsu07g00712 978 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 39 946 - -
Tsu07g00712 978 Pfam RNA polymerase Rpb2, domain 5 673 719 IPR007647 GO:0006351
Tsu07g00712 978 Pfam RNA polymerase Rpb2, domain 2 283 424 IPR007642 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 Pfam RNA polymerase beta subunit 70 460 IPR007644 GO:0003677|GO:0003899|GO:0006351
Tsu07g00712 978 Gene3D - 759 945 IPR014724 GO:0003899
Tsu07g00712 978 Gene3D - 729 840 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00712 Tsu-Chr7 5840706 5845639 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00712 - K16252 gmx:100815934 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00712 07 5840706 5845639 Tsu07g00712 07 5840706 5845639 ECH