Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00703 ATGGCAACCAGAAGAACTTCAAAACTAACCAAAACCGTTCTCACCGCCGTAACGGCATCCAGAACTAGAACCCCTCTCACTCGTCCTCTCTCCACCGCACCACTCTTCAATGGAAGCTTGCCTCATCCCTCAGAGAACCCCAGAAATCCTCTTTCACGCTCTAAGATTATCGACGGAACCACCAATGTCGCCTCCGCTAAGTTCCTTTCTCACTCTTTCACTCGCAATTTTCACGCATCTACTCCTTCTTATCGCTCTGCCGGAGCCTCTCAGATATCACAAACGGAGTTCACAGAAATGGCCTGGGAGGGCATTCTTGGTGCCGTTGATGCCGCGCGAGTCAATAAACAACAAGTTGTGGAGTCAGAGCATTTAATGAAAGCTCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGGATATTTACTAAGGCAGGGTTGGACAACACGTCAGTTCTACAGGCTACTGATAACTTTATAGCTCAGCAACCTAAGGTTACAGGTGACACTTCTGGTCCTATAATGGGTTCGCATTTTAGCTCCATCTTGAACAACTCTCAAAGGCACAAGAAAGAAATGGGTGATGAGTATGTGTCTGTGGAACACCTTTTGCTAGCATTTCATTCAGATAAGAGGTTTGGGCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAACACTTTGAAGGATGCTGTAAAGGCTATTCGTGGAAGTCAAAGAGTAACCGATCAAAATCCCGAGGGGAAATATGAAGCATTGGACAAGTATGGAAGTGACCTGACTGAACTTGCTAGGCGCGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATTCAGATATTGTCAAGAAGAACGAAGAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATCGCTGAAGGATTAGCACAACGTATAGTGCGTGGAGATGTTCCAGAGCCATTGATGAACAGGAAGTTGATCTCCCTTGATATGGGTTCATTGCTTGCGGGTGCCAAGTTTCGTGGAGATTTCGAAGAAAGGTTAAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGgcaaataattttgtttattgatGAAATACACACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGTAGAGGCGAACTTCGATGTATAGGAGCAACTACATTGAATGAATATAGAAAATACATTGAGAAGGATCCCGCACTTGAGCGTAGATTTCAACAAGTATTTTGCTGTCAACCATCTGTTGAAGATACAATATCCATTCTCCGTGGGTTGCGCGAGCGCTATGAATTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCGGCAGTTCTTGCAGATCGATACATCACAGAACGTTTCCTACCAGACAAAGCTATTGATCTTGTCGATGAAGCTGCTGCAAAGCTAAAAATGGAAATAACCTCGAAGCCTACAGAATTGGATGAGATAGATAGAGCAGTCTTGAAACTGGAGATGGAAAAACTCTCTTTGAAAAATGACACTGACAAGGCTTCTAAAGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTTACttaaacagaaacaaaaagaatTGGCGGAACAATGGGACAGTGAAAAAGTTTTGATGACTCGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCCGAGCGTGACTATGATCTGAACCGTGCCGCTGAGCTTAAATATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAATCTAGCCGACTTCCAAAACTCTGGACAATCTTTTCTTCGTGAAGAGGTCAGCGACCTTGATATTACCGAGATTGTAAGCAAATGGACTGGTATACCACTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTTTCGCTGGAAAAGGTTCTTCATAAGAGGGTGATTGGTCAGGATATTGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCGAGGGCTGGATTGTCTGACCCAAACAGGCCAATTGCAAGCTTTATGTTCATGGGTCCGACTGGTGTTGGCAAAACTGAGCTTGGCAAGGCTTTGGCCAATTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATCGATATGAGTGAGTACATGGAGAAACACGCCGTTTCACGTTTAGTTGGGGCTCCACCTGGTTATGTAGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTGGTCCGCAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAAGCGCATCACGATGTCTTCAATATCTTGTTGCAATTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGTTCTCATTACATACTTGAAACCCTTCGTAGTACACAAGATGACAAAGTTGCAGTTTATGATCAGATGAAAAGCCAAGTTGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAATCGCATTGACGAGTATATAGTTTTCCAGCCTTTGGATTCCAATGAGATAAGCAAAATAGTGGAGCTTCAGATGGAACGAGTGAAGAACAGGCTCAAGCAGAAGAAAATTGATCTACATTACACACCAGAAGCTGTTAAACTTCTTGGTGTATTGGGTTTTGATCCTAATTTTGGGGCAAGACCAGTTAAAAGAGTAATACAACAATtggttgaaaatgaaattgctATGGGAGTTCTAAGAGGAGATTTCAGAGAAGAGGACTCAATCATTGTTGATACTGATGATACTCCATCAGGCAAGGAACGTCTTCCCTTAAATAGACTGATTATTAAGAAGCAGGAGAACCTTGTTGCTGATGCAATGGTTGCCAATGACTAA 2946 0.4212 MATRRTSKLTKTVLTAVTASRTRTPLTRPLSTAPLFNGSLPHPSENPRNPLSRSKIIDGTTNVASAKFLSHSFTRNFHASTPSYRSAGASQISQTEFTEMAWEGILGAVDAARVNKQQVVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDNFIAQQPKVTGDTSGPIMGSHFSSILNNSQRHKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSENTLKDAVKAIRGSQRVTDQNPEGKYEALDKYGSDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCCQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFQNSGQSFLREEVSDLDITEIVSKWTGIPLSNLQQTEREKLVSLEKVLHKRVIGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELGKALANYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRSTQDDKVAVYDQMKSQVVELARQTFRPEFMNRIDEYIVFQPLDSNEISKIVELQMERVKNRLKQKKIDLHYTPEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFREEDSIIVDTDDTPSGKERLPLNRLIIKKQENLVADAMVAND 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00703 981 Pfam AAA domain (Cdc48 subfamily) 691 860 IPR003959 GO:0005524|GO:0016887
Tsu07g00703 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 640 IPR027417 -
Tsu07g00703 981 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 97 951 IPR017730 GO:0005737|GO:0009408|GO:0042026
Tsu07g00703 981 SMART ClpB_D2_small_2 867 961 IPR019489 -
Tsu07g00703 981 ProSitePatterns Chaperonins clpA/B signature 2. 726 744 IPR028299 -
Tsu07g00703 981 Gene3D - 240 433 IPR027417 -
Tsu07g00703 981 Gene3D - 93 239 IPR036628 -
Tsu07g00703 981 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 696 714 IPR001270 GO:0005524
Tsu07g00703 981 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 741 759 IPR001270 GO:0005524
Tsu07g00703 981 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 770 788 IPR001270 GO:0005524
Tsu07g00703 981 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 803 817 IPR001270 GO:0005524
Tsu07g00703 981 ProSiteProfiles Clp repeat (R) domain profile. 92 237 IPR004176 -
Tsu07g00703 981 SUPERFAMILY Double Clp-N motif 96 247 IPR036628 -
Tsu07g00703 981 Pfam AAA lid domain 433 535 IPR041546 -
Tsu07g00703 981 Coils Coil 503 523 - -
Tsu07g00703 981 Gene3D - 434 639 IPR027417 -
Tsu07g00703 981 Coils Coil 590 624 - -
Tsu07g00703 981 Gene3D - 867 963 - -
Tsu07g00703 981 PANTHER BNAC09G42450D PROTEIN 70 976 - -
Tsu07g00703 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 951 IPR027417 -
Tsu07g00703 981 PANTHER ATP-DEPENDENT CLP PROTEASE 70 976 - -
Tsu07g00703 981 CDD AAA 666 814 - -
Tsu07g00703 981 Pfam ATPase family associated with various cellular activities (AAA) 295 428 IPR003959 GO:0005524|GO:0016887
Tsu07g00703 981 Coils Coil 525 552 - -
Tsu07g00703 981 Pfam Clp amino terminal domain, pathogenicity island component 108 159 IPR004176 -
Tsu07g00703 981 Pfam Clp amino terminal domain, pathogenicity island component 186 236 IPR004176 -
Tsu07g00703 981 Pfam C-terminal, D2-small domain, of ClpB protein 867 947 IPR019489 -
Tsu07g00703 981 Gene3D - 644 865 IPR027417 -
Tsu07g00703 981 CDD AAA 272 432 - -
Tsu07g00703 981 MobiDBLite consensus disorder prediction 21 52 - -
Tsu07g00703 981 Coils Coil 563 583 - -
Tsu07g00703 981 SMART AAA_5 692 849 IPR003593 -
Tsu07g00703 981 SMART AAA_5 289 434 IPR003593 -
Tsu07g00703 981 ProSitePatterns Chaperonins clpA/B signature 1. 385 397 IPR018368 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00703 Tsu-Chr7 5710721 5718648 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00703 K03695 - gmx:100782242 1697.56