Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00679 ATGTTTGTGGAGTTACTGCTTATGATCTTAGCCATATTGGTCATGCTCGTGTTTACGTTAATTTCGATCTTCTTTATAGGCAGATATTTTAAGCACTTGGGATTTGAAGTTTGTTATGTTCGTAATTTTACTGATGTAGATGACAAGATAATTGCTAGATCAACGGAGTTAGGAGAAGATCCAATTAGTTTGAGTCGACGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTTTGCCTCCTACCAAAGAACCAAAAGTCTCCGAGCACATGCCGCAAATCATTGATATGATTGAGAAGATTGTTAATAATGGGTATGCGTACAATGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCTAGTCGAGGTCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATACAAGGAAGAAAAATCCTGCTGATTTTGCTCTATGGAAGTCTACAAAGCCAGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAACTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTATTTCCTCACcatgaaaatgaaattgctCAGAGTTGTGCGGCTTGTAGTAAAAGTGATATTAGTGTCTGGATGCACAATGGTTTTGTCAACATCGACTCTGTGAAGATGTCTAAATCTCTGGGGAACTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCCCATTATAGATCTCCTATGAACTACTCTAATATACACCTTGAAAGTGCTTCAGACcgtgtttattatatatatgagACATTACATGAATGTGAAAACTTGCTGAACCAGCATGATCAGACAGTTAAGAAGGACTCTGTCCCATCAGATACTTTGAGTATTATCGATAACCTCTATGATGTTTTTCTGACCTCAATGTCAGATGATCTTCACACTCCGGTTGTATTGGCCGGACTGTCTGATCCACTTAAATTAATTAACGACTTGCTGCATACTCGCAAGGggaaaaaacaacaatttcGAATAGAATCACTTGCAGCGTTGAAGAAAAGAATTGGTGATGTACTTACTGTTTTAGGACTTATGCCTTCGAGTTACTTTGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTCTTAAGCGTGCAAACTTGACAGAAGAAGAAATCTTGAAGAAGATTGAAGAACGAGATGATGCTAGAATACAAAAGGAGTATGCCAAATCTGATGCCATAAGGAAAGATTTGGCTGTTGCTGGTATTGCTCTTATGGATAGTCCAAATGGCACAGCTTGGAGGCCTACCATTCCTCTTCCACTTCAAGAGCAGCTCTAG 1419 0.3855 MFVELLLMILAILVMLVFTLISIFFIGRYFKHLGFEVCYVRNFTDVDDKIIARSTELGEDPISLSRRYCEEFCQDMVTLNCLPPTKEPKVSEHMPQIIDMIEKIVNNGYAYNVDGDVYFNVEKFPEYGKLSSRGLEDNRAGERVAVDTRKKNPADFALWKSTKPGEPFWESPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACSKSDISVWMHNGFVNIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPMNYSNIHLESASDRVYYIYETLHECENLLNQHDQTVKKDSVPSDTLSIIDNLYDVFLTSMSDDLHTPVVLAGLSDPLKLINDLLHTRKGKKQQFRIESLAALKKRIGDVLTVLGLMPSSYFEVLQQLKEKALKRANLTEEEILKKIEERDDARIQKEYAKSDAIRKDLAVAGIALMDSPNGTAWRPTIPLPLQEQL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00679 472 Coils Coil 397 417 - -
Tsu07g00679 472 Hamap Cysteine--tRNA ligase [cysS]. 5 463 IPR015803 GO:0004817|GO:0005524|GO:0006423
Tsu07g00679 472 Pfam tRNA synthetases class I (C) catalytic domain 21 287 IPR032678 -
Tsu07g00679 472 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 317 462 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu07g00679 472 TIGRFAM cysS: cysteine--tRNA ligase 20 461 IPR015803 GO:0004817|GO:0005524|GO:0006423
Tsu07g00679 472 Gene3D HUPs 17 280 IPR014729 -
Tsu07g00679 472 Gene3D - 281 462 - -
Tsu07g00679 472 PANTHER CYSTEINYL-TRNA SYNTHETASE 21 470 IPR024909 -
Tsu07g00679 472 SUPERFAMILY Nucleotidylyl transferase 22 285 - -
Tsu07g00679 472 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 21 470 - -
Tsu07g00679 472 CDD CysRS_core 23 280 IPR032678 -
Tsu07g00679 472 PRINTS Cysteinyl-tRNA synthetase signature 197 218 IPR024909 -
Tsu07g00679 472 PRINTS Cysteinyl-tRNA synthetase signature 166 184 IPR024909 -
Tsu07g00679 472 PRINTS Cysteinyl-tRNA synthetase signature 37 46 IPR024909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00679 Tsu-Chr7 5427603 5432019 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00679 K01883 - gmx:100786700 821.617