Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00616 ATGGGTACTGTTTCTGCTAGACACCCATTTGGAATcccttttcattttcaatccctaaatcgcAGATTGGAATGTTCAATCTCCCAATTTCCTCTCCATTTCGACCTTTCCAGAATCACCTTATATTCTGCTTCTGAGGGATTAATTCATCGAGTTTCTGCGCGACCTGATATTGATGATTTCTACTGGGAGAAAGTTCCAACGCCCATTCTTGATACAGTCGAAAGCCCTCTTTGCTTGAAGAACTTATCTCTAAGGGAGTTGAAACAACTAGCTGCTGAAATCCGTTTAGATTTGTCTTCTATTATGTCAGGTACACCAATATTACTAAATCCAAGTATGGCTGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTCGGCGATCAAACATACGCACATAAGATACTTACAGGAAGGAGATCACTCATGAAGACAATCAGACAAAAGAACGGCCTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATACGACGCATTTGGCGCAGGTCATGGATGCAACAGCATATCTGCTGGACTTggaatgGCAGTTGCACGGGATATTAAAGGGAGACGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGTCCGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTAATTTTGAACGATAGCCGCCACTCTTTACTACCAAAAATTGAGGAGGGATCGAAAACCTCTGTCAATGCCCTATCTAGTACCCTTAGCAGGCTCCAATCCAGCAAATCTTTCCGGAGATTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATAGGCATGGGCATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGGCCACCAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGGCCAGTCGATGGACACAATATTGAAGATCTAATAAGCGTTCTTCAAGAAGTAGCTTCCTTGGATTCGATGGGTCCTGTCTTGGTTCATGTGATAACTGATGAAAATCAGGTTGAAGAacacaataaaaaaagttatataacAGACAAGCAGATGGATAGTTATATAACAGACAAGCAGATGGATGAGTCTTTCAGTTCTGATTTATTAGATAATGCTGGTCGGCCTCAAACATATGGTGATTACTTTGTGGAGACCTTGGTTGCTGAAGCTGAGAAAGACAAGGATATTGTGGTTGTTCATGCAGGATTCACAACAGAGCCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGGATTTTTAATGTGGGAATTGCTGAGCAACACGCAGTGACATTTGCTTCTGGTTTGTCATGTGGAGGATTGAAGCCATTTTGCATTATACCTTCTTCTTTTCTACAGAGAGCCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTGGGTTCTGATGGTCCTCTCCAGTGTGGAGCATTTGACATAACGTTCATGTCATGCCTACCGAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGCACATGGTGGCTACTGCTGCTCGTATCAATGACCGTCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGGAAGACCACACTATACATGATGGAATCCCGATTGAGATTGGAAAGGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCCTTACTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCCCGTTCACTTCTTGCAAAACTTGGCGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGATATCAAGCTTCTTAGGCAGCTCTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGATCTATTGGAGGGTTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTCGACGGAAGAATTAAGTGGCGACCAATTGTCTTACCAGACAGTTATATTGAACATGCATCACCAAATCAGCAGCTTGACCAAGCAGGGTTGACCGGACATCACATTGCTGCGGCAACATTGAGTTTGCTGGGCCGTACCCGTGAAGCTCTATCGTTTATGTGTTTGTGA 2163 0.4216 MGTVSARHPFGIPFHFQSLNRRLECSISQFPLHFDLSRITLYSASEGLIHRVSARPDIDDFYWEKVPTPILDTVESPLCLKNLSLRELKQLAAEIRLDLSSIMSGTPILLNPSMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGSKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGMGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLVHVITDENQVEEHNKKSYITDKQMDSYITDKQMDESFSSDLLDNAGRPQTYGDYFVETLVAEAEKDKDIVVVHAGFTTEPSLELFREKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATAARINDRPVCFRYPRGALVGEDHTIHDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKARSLLAKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNQQLDQAGLTGHHIAAATLSLLGRTREALSFMCL 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00616 720 Gene3D - 577 708 IPR009014 GO:0003824
Tsu07g00616 720 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 719 - -
Tsu07g00616 720 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 460 IPR029061 -
Tsu07g00616 720 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 397 587 IPR029061 -
Tsu07g00616 720 Gene3D - 63 359 - -
Tsu07g00616 720 CDD TPP_PYR_DXS_TK_like 403 558 - -
Tsu07g00616 720 Pfam Transketolase, C-terminal domain 577 700 IPR033248 -
Tsu07g00616 720 SMART Transket_pyr_3 399 564 IPR005475 -
Tsu07g00616 720 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 73 707 IPR005477 GO:0008661|GO:0016114
Tsu07g00616 720 Gene3D - 399 570 - -
Tsu07g00616 720 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 355 IPR005477 GO:0008661|GO:0016114
Tsu07g00616 720 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 709 IPR005477 GO:0008661|GO:0016114
Tsu07g00616 720 SUPERFAMILY TK C-terminal domain-like 572 708 IPR009014 GO:0003824
Tsu07g00616 720 CDD TPP_DXS 110 355 IPR005477 GO:0008661|GO:0016114
Tsu07g00616 720 Pfam Transketolase, pyrimidine binding domain 400 561 IPR005475 -
Tsu07g00616 720 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 719 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00616 Tsu-Chr7 4901421 4907503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00616 437 659 Acyl Lipid Metabolism Gene Families AT1G55510 25.000 3.63e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00616 K01662 - gmx:100793268 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00616 07 4901421 4907503 Tsu07g00616 07 4901421 4907503 ECH