Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00600 ATGTCGAATAATTTTGTTTCCGAGTCAGTAACCAACCAGCAGATGGCTCAATTGGAACCTATTATGAACAAGGTTGATTCGTCGGGACTAGTACATCCTGTATCAAGTGATTCTGTGCCACAGAATCAGGGAACCTCGAACGGTGAACCTACTTCGTCTCAAGGGTTACCGCTTTCCAATAGGCAGATCAAAATGTTGAATAATTTAGGGTCAAATCATCTGTCAGCAGCTCCTAAGCGGAAGGCAACGATTGAACTGCCTTCGGGTAGTTTCATAACACCTAACAAGCGGGAGAAACCAATGGGAAATAGACCTTGGATGCAACAAGGATCAAATAAAGGTTCTCAACAGATGCAGTCCCCGTCAAATGCTTCTAGGTTGCAGCATTCGGCATCATTTAGTAAGAGAAAAACACAAACGGATTCTGCCTCCAGCAAAGCTGGGACACCTCGGTCCTCAAATTCTAAAAATCAGAATGCACAGACGAAAGAATCCTCCAAGGTTCAATCTGAGTCTTCTGAGAGTGTTAGGTCCAAGATGAGAGAATCATTAGCTTCTGCTCTGGCGTTGGTATCCCAGCAAGATAAACCTCTGGTCTCAAACAATGACAAACCAAATGATGCTGCCAATAGCTCTCAATGTGCTGGATCAGCATCAGCGTCTGCTGACACTGCTCCGGAGCAAAGGCAGGAAATTTGTCAATCTGTTAACTCCTCTTTAGCTGTGGCCGATTCCATTAACCATGTGATAGGAGAGCACATGAATAGTGCATCTGTTGAAGATTTTGCTGAAAAACCTAAGGACTATGGAGCGGGGTTCACAAACGTGTTAAACAATGAAGATATGCTGAGTTTCGATAAGCAAGATTTCCAGTCTAACTACACTTTGACTACTGATGATGTTCCTTTCAGTGACTTCTTTGTGAAAGATGAACTTTTGCAGGGAAATGGTCTTTCTTGGGTATTATCTGATATGGACCCTATGGTGGACATGGATGATCAAAGGGAAAATCTAACTACGGTCGAGAAGAAATTGGAACCTGAGGAAACAAGTGGAGTTTGTACGGAGGTGGTCCCTTTACCTGAACTTTTAGCATCAAGGATAGAAGAAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACTTGAAAGATCGCAATAATCCTGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTCCTCCAGAACAATTATGTTCCATGACTGCCGAGGAACTTGCTTCAAAGGAACTTTCTGAGTGGCGGATAGCCAAGGCTGAGGAGTTTGATAAAATGGTGGTTTTACCCGATTCAGATGTTGATATTAGACGTCTAGTCAGGAAAACGCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACCATGTTCCAGTGGAAGAGGTGTCCGGTGGCAAAACTTCTGTTGTTCGAAGCCGGCCAGTTGAAAAGGGCGTGGAAGCCATTTCTCGTTCCAAACCTGATGTAATCAAAAGCAACGTGAACACTGACAATGACAAGAGCAACTTACAGACGAATAATCAATTTTCCATCACCATTTCTTCCAATGATGGGACTGATCCAATGCAAGGGCTTATGACAGATGATAATGCATTGAAGGTCCCTGACTTTCCTGAACAATCTTTTGACGAATTCATGGAGGCCCTTGATTCTGAGCCACCATTTGAAAATTTACCTGTAGAGTCTGGAAAAGCACCTAGCTCAGACAAGGATGTTTCCGGGGTtggatcaaaatcaaaatcttctGATTTAACTCCAAGTGAGCAAGAAGATGTCAGTGCTAATAAGTCTGATAAGCTTCAAAGCACAGATGCCGAGGAGGGAAAAAAAGTTAACACCGAAGCAGGGTCCATTTTGTCTGATACAAAATACGGTGAAAGTCGACCGGACACAAAGCCGACTGACGGTCATACCAAGGAAATGTCAACTGACGGCAAAAAGTCAATTTCCAATGATGCTGAGTTAAGAGCTAGTAAGTTTCATGCAGAAGAGAAATATGGCAAGGATAATGTGTTGAAAACTACAGACCCTATTAAGGGTGAAATCCTCTGGGAGGGAATGCTTCAGCCAAACATCTCAACCACTGATTCAGTTATTAGCGTCTTCAAAAGTGGCGAGAAAACTTCTACCAAAGAGTGGCCTGGATTTCTCGAGATCAAGGGAAGGGTTCGACTGGATGCATTTGAAAAATTTCTGCTAGAGCTTCCACAGTCAAGAACTCGTGCCATCATGGTTTCACATTTTCTTTCCAAAGGCTCCACCCTTGAGGAGCAAGCAACTCTACGTGAGGTGGCTGACTCGTATATTTTGGACGAGAGAGTGGGATTTGGGGAACCTGTGCACGGAGTTGAACTTTACTTTTGCCCACCACATAAGAAAACAGTTGAAATGCTCAGCAAGATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTGTTATTGTATggagaaaaactaatataactaCATCTATATCTCCCACCACGCAATCACACAACAAACATAGCTCTAAAAGGCAAAACTTTAGTAGAAGACAGCAAGATAGTAATGTGAATGCCAATTCTACACATAATGTAGTGCCCTCTTCGGGGTTTAAGACAACCATGAGTGAACCTCCgggtggtgatgatgatgacgatgacGTTCCTCCTGGATTCGGGCCACCGGTAGCCCGGGTTGAGGATGACCTCCCGGAGTATAATTTTTCCGGTAGTTCAAATCCATCATCACACTCGGTTCAAAAACCTTTGGGACAAGTTATGGTCCCATCTCACTCGGTTGTCCAAACCCCGTCACGTCCTGCACAACAAATGAGAGAACTTGTACACAAATATGGGCAAAACAAAACAACTGTATCTTCAGTAAATTGGCAGGACAAATTTGGGGGTTCAATTCAGCCCTGGaatgatgacgatgatgataTACCTGAATGGCAAcctcaaatcaacaacaaccagAATCAGTTTCCTACTCAACAAACTATGCATAATTTTCATCTTAGACCTCACATTGTGAATCAATCATTTGCGGGTTTACCCCAGCAACAAATAATGCCGACACAATATATGCAACCACCTATGAATGTAACACATGTACAACGAAACTTTGCCCCTCAGTGGGTTCCTCCAATTCAGGGTAACAATATACAACCAAATGGTGCACCACCCTATGGAACACCTACACAAGGAACTCCATGGTCTCAACATGTTTCTAGAAGTAGAGGACTTTAG 3306 0.4156 MSNNFVSESVTNQQMAQLEPIMNKVDSSGLVHPVSSDSVPQNQGTSNGEPTSSQGLPLSNRQIKMLNNLGSNHLSAAPKRKATIELPSGSFITPNKREKPMGNRPWMQQGSNKGSQQMQSPSNASRLQHSASFSKRKTQTDSASSKAGTPRSSNSKNQNAQTKESSKVQSESSESVRSKMRESLASALALVSQQDKPLVSNNDKPNDAANSSQCAGSASASADTAPEQRQEICQSVNSSLAVADSINHVIGEHMNSASVEDFAEKPKDYGAGFTNVLNNEDMLSFDKQDFQSNYTLTTDDVPFSDFFVKDELLQGNGLSWVLSDMDPMVDMDDQRENLTTVEKKLEPEETSGVCTEVVPLPELLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSMTAEELASKELSEWRIAKAEEFDKMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDHVPVEEVSGGKTSVVRSRPVEKGVEAISRSKPDVIKSNVNTDNDKSNLQTNNQFSITISSNDGTDPMQGLMTDDNALKVPDFPEQSFDEFMEALDSEPPFENLPVESGKAPSSDKDVSGVGSKSKSSDLTPSEQEDVSANKSDKLQSTDAEEGKKVNTEAGSILSDTKYGESRPDTKPTDGHTKEMSTDGKKSISNDAELRASKFHAEEKYGKDNVLKTTDPIKGEILWEGMLQPNISTTDSVISVFKSGEKTSTKEWPGFLEIKGRVRLDAFEKFLLELPQSRTRAIMVSHFLSKGSTLEEQATLREVADSYILDERVGFGEPVHGVELYFCPPHKKTVEMLSKILPKEQIEAVNSIDNGLIGVIVWRKTNITTSISPTTQSHNKHSSKRQNFSRRQQDSNVNANSTHNVVPSSGFKTTMSEPPGGDDDDDDVPPGFGPPVARVEDDLPEYNFSGSSNPSSHSVQKPLGQVMVPSHSVVQTPSRPAQQMRELVHKYGQNKTTVSSVNWQDKFGGSIQPWNDDDDDIPEWQPQINNNQNQFPTQQTMHNFHLRPHIVNQSFAGLPQQQIMPTQYMQPPMNVTHVQRNFAPQWVPPIQGNNIQPNGAPPYGTPTQGTPWSQHVSRSRGL 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00600 1101 SMART mid_6 332 435 IPR003618 GO:0006351
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 105 173 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 868 894 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 643 669 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 17 181 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 194 230 - -
Tsu07g00600 1101 Pfam SPOC domain 698 841 IPR012921 -
Tsu07g00600 1101 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 32 1082 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 1070 1101 - -
Tsu07g00600 1101 Gene3D - 332 427 IPR036575 GO:0006351
Tsu07g00600 1101 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 32 1082 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 925 940 - -
Tsu07g00600 1101 Pfam Transcription factor S-II (TFIIS), central domain 358 439 IPR003618 GO:0006351
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 29 74 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 850 940 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 590 609 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 610 629 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 531 554 - -
Tsu07g00600 1101 MobiDBLite consensus disorder prediction 571 669 - -
Tsu07g00600 1101 ProSiteProfiles TFIIS central domain profile. 330 452 IPR003618 GO:0006351
Tsu07g00600 1101 SUPERFAMILY Elongation factor TFIIS domain 2 360 428 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00600 Tsu-Chr7 4774225 4779957 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00600 - - gmx:100808809 1367.83