Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00562 ATGCAGCTGTGGCTTAGGATTTCCTTGGTTGTGCCTGATGATGACTCTATGGATGCAAACTCTGCCACTCTGGTTGACTCCTGGGAAACATGGAATTCATTTCGTCTGCTTTGCGAGCATCACAGTCAACTGTCAGTTGCACTTGATATTCTGAGTACTCTGCCTTCAGCAAGTTCATTAGGACGGTGGTTTGGGGAGTCTGTTAGAGCAGCTATAGTAAATACTGATTCCTTTTTAACTAATGGTCGTGGATATCCATGTCTCTCCAAGCGCCATCAGATGTTGATTACTCGGTTTTTTAACCATAATATACAGATAATTATATCTGCAAATTCTGGTACTCCTAAAGCAAGTGTGGATGCAAATGATTTTCATAATCGTTCTGTTGCGGATTCACAAAGACATCCCCTGCGTCTATATCTGGATTATGTTGGACATCTTTACCAAAAAATGGATCCTCTTCCTGAGCAAGAACGTTTTGAGCTTGGATACAGGGATTATTTACAGTCACCTTTGCAACCTTTGATGGATAATTTGGAGGCTCGTACTTATGAGACTTTTGAGAAAGATGCTATGAAATACATTCAGTACCAAAGAGCAGTAAGTAAAGCAATGCTGGACATGATTCCTGATGAAGAGGCATCTACTAAAACCATTGTACTGATGGTTGTTGGAGCAGGGCGTGGACCTCTTGTGCGGGCATCATTACAGGCTTCGGAAGAAACTGGACGGAAGCTAAAAGTTTATGCTGTTGAAAAGAATCCAAATGCAGTTGTTACCCTTCATGCATTAGTTAAATTAGAAGGATGGGAGGATATTGTTACTATAGTCTCAAGTGACATGCGCTATTGGAACGCCCCTGAAAAAGCAGATATATTGGTTAGTGAATTGCTAGGTTCTTTTGGTGACAATGAACTGTCTCCCGAGTGCCTTGATGGAGCTCAGAGATTTTTGAAGCCAGAAGGAATTTCAATACCATCTTCGTACACAAGTTTCATCCAACCAGTGACAGCTTCAAAGTTATATAATGATGTTAAAGCACATAAAGATGTTTCACACTTCGAAACTGCATATGTTGTGAAAATACACAATGCAGCCCGACTTGCACCATGTCAATCCGTTTTTACATTTACTCATCCAAAATCCGTTGATAGTGAAAGCCCCGTTGATAGTGAAAGCAATCAACGCTATAAGAAGTTGCATTTTACAATACCAAATGACACTGGGTCTGCGATGGTACATGGATTTGCTGGCTACTTTGACGCTGTTCTTTACAAGGACGTGCATCTTGGGATTGAACCTTCAACAGCTACACCAAACATGTTCAGCTGgttttcaatatttttcccTCTAAGGACACCTATTTACCTGAAACCAGGTTCAACACTTGAAGTAAATTTCTGGCGCTGTTGTGGTCCGAAAAAGGTTTGGTATGAGTGGTGTGTTACATCTCCCTCTGAGTCTCCAATCCACAACAGTAATGGACGTTCATACTGGGTTGGACTTTAG 1509 0.4089 MQLWLRISLVVPDDDSMDANSATLVDSWETWNSFRLLCEHHSQLSVALDILSTLPSASSLGRWFGESVRAAIVNTDSFLTNGRGYPCLSKRHQMLITRFFNHNIQIIISANSGTPKASVDANDFHNRSVADSQRHPLRLYLDYVGHLYQKMDPLPEQERFELGYRDYLQSPLQPLMDNLEARTYETFEKDAMKYIQYQRAVSKAMLDMIPDEEASTKTIVLMVVGAGRGPLVRASLQASEETGRKLKVYAVEKNPNAVVTLHALVKLEGWEDIVTIVSSDMRYWNAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPEGISIPSSYTSFIQPVTASKLYNDVKAHKDVSHFETAYVVKIHNAARLAPCQSVFTFTHPKSVDSESPVDSESNQRYKKLHFTIPNDTGSAMVHGFAGYFDAVLYKDVHLGIEPSTATPNMFSWFSIFFPLRTPIYLKPGSTLEVNFWRCCGPKKVWYEWCVTSPSESPIHNSNGRSYWVGL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00562 502 Pfam PRMT5 TIM barrel domain 2 150 IPR035247 -
Tsu07g00562 502 Pfam PRMT5 oligomerisation domain 328 500 IPR035248 -
Tsu07g00562 502 Gene3D Vaccinia Virus protein VP39 160 327 IPR029063 -
Tsu07g00562 502 PIRSF PRMT5 2 502 IPR007857 GO:0006479|GO:0008168|GO:0035246
Tsu07g00562 502 Gene3D - 1 157 - -
Tsu07g00562 502 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 502 - -
Tsu07g00562 502 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 168 480 IPR025799 GO:0016274|GO:0018216
Tsu07g00562 502 Gene3D - 328 501 - -
Tsu07g00562 502 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 185 501 IPR029063 -
Tsu07g00562 502 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 502 IPR025799 GO:0016274|GO:0018216
Tsu07g00562 502 Pfam PRMT5 arginine-N-methyltransferase 156 325 IPR035075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00562 Tsu-Chr7 4400845 4408193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00562 K02516 - gmx:100782245 860.522