Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00558 ATGGCCATTTCCATAAGCACTACACTTCAATTTCTGACTCTCAATTCATCCAAATCAACACTAACATCAATTCTCACAAATCCAACATCACGATATCAATTCTCAACCATCACCATGAACTTGTGCACCACCAAAACCGAACCAGTAACCACCtcctcatcatcttcttcctcaatgCAGTACGTGCCAGAGCAAGATTCTAACAAAATGGAACGTGTTTTCAACCAAACATTCCAAAGGTATTCATCCAACAACACCAAAAGAACTGGTAAAGGTACAGCAATCGTGTGGTTTAGGAATGATCTCAGAGTTTTGGATAATGAAGCTCTTTACAAGGCTTGGATTTCCTCACAAACTCTATTGCCTGTTTATTGTATTGATCCTCGACTTTTTGCAACCACTCACTATTTCGGATTTCCCAAAACCGGAGCATTGAGAGCACAATTTCTCCTTGAATGCTTGGCTGACTTGAAGAAGAATCTAATGAAACGGGGACTTGATTTGCTTATTCAACATGGGAAACCTGAAGATATTATTCCTTCTCTGGCTAAAGCTTATGGAGCCCATACAGTTTATGCACAGAAAGAAACTTGTAGCGAGGAGCTGAATGTTGAAAGGTCTGTCAGTAGATGTCTTCAACAAGTGGTGGTACCATCTGAGGAATCTGCTGGGGCGGCAACAACATCAAACCGCCACCCCAATTTACAGTTTGTTTGGGGAACCACCATGTACCACCGTGATGATCTTCCTTTTGATGTCACTTGTTTGCCGGATGTTTATACTCAATTTCCTAAATGTGTCGTGCGCTCATGCATCAAACTGCCAACTTCACTTGGACCGCCTCCCCCAATTGAGGATTGGGGATGTCTTCCTTCAATGGAGCAGCTGGGACTTTGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTCGGGGGTGAAACTGCGGGCCTGAGCAGAATATATGAATACTTTTGGAAGAAGGATTTGCTGAAGGTATATAAAGAGACCCGAAATGGGATGCTAGGGCCTGATTATTCTACTAAATTCTCTCCATGGCTTGCATCCGGAAGTTTGTCACCTCGTCTTATACACGAAGAGGTGAAGAGATATGAGAATGAAAGACAAGCGAATAGTTCTACCTACTGGGTTTTGTTCGAGCTGATATGGAGGGATTACTTTAGGTTTCTATCAGTCAAATATGGAAATTCAATTTTCCATATAGgTGGACCTAGAAATATTCAGCATAATTGGAGTCAAGACAAGAAATTATTTGAATCCTGGAGAGATGGCTGTACAGGGTATCCTCTGATAGATGCCAACATGAAAGAATTATCAACGACAGGTTTTATGTCGAACCGAGGACGACAGattgtgTGCTCGTTTCTAGTTCGTGACATGGGCATAGATTGGCGCATGGGCGCAGAATGGTTTGAGACATGTCTTTTGGATTACGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCTAGGGAAGACCGTTATTTCAGCATACCAAAACAAGCACAAACATACGACCCAGAAGGCGAATATGTTGCATACTGGTTGCCACAGTTACGAGCAATCTCAAAAGATAAAAGGAACTTTCCTGGTAATTTATATATTCGTCAAATTGTGCCTCTCAAATTTGGAACAACTAGTAGACACAATAAGGAGGACAAGTCGCATGGTGCAAGAAGAGGTAATGATCGAAGATCAAACAGGCGACAAGTTTAG 1755 0.412 MAISISTTLQFLTLNSSKSTLTSILTNPTSRYQFSTITMNLCTTKTEPVTTSSSSSSSMQYVPEQDSNKMERVFNQTFQRYSSNNTKRTGKGTAIVWFRNDLRVLDNEALYKAWISSQTLLPVYCIDPRLFATTHYFGFPKTGALRAQFLLECLADLKKNLMKRGLDLLIQHGKPEDIIPSLAKAYGAHTVYAQKETCSEELNVERSVSRCLQQVVVPSEESAGAATTSNRHPNLQFVWGTTMYHRDDLPFDVTCLPDVYTQFPKCVVRSCIKLPTSLGPPPPIEDWGCLPSMEQLGLCSQNVSKGMKFVGGETAGLSRIYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSIFHIGGPRNIQHNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKDKRNFPGNLYIRQIVPLKFGTTSRHNKEDKSHGARRGNDRRSNRRQV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00558 584 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 406 560 - -
Tsu07g00558 584 PANTHER CRYPTOCHROME DASH 78 566 - -
Tsu07g00558 584 Gene3D HUPs 56 240 IPR014729 -
Tsu07g00558 584 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 92 225 IPR006050 -
Tsu07g00558 584 PRINTS DNA photolyase signature 452 470 IPR002081 -
Tsu07g00558 584 PRINTS DNA photolyase signature 491 505 IPR002081 -
Tsu07g00558 584 PRINTS DNA photolyase signature 432 448 IPR002081 -
Tsu07g00558 584 Pfam FAD binding domain of DNA photolyase 385 539 IPR005101 -
Tsu07g00558 584 PANTHER CRYPTOCHROME 78 566 IPR002081 -
Tsu07g00558 584 MobiDBLite consensus disorder prediction 559 584 - -
Tsu07g00558 584 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 91 284 IPR036155 -
Tsu07g00558 584 Pfam DNA photolyase 94 271 IPR006050 -
Tsu07g00558 584 Gene3D - 241 405 - -
Tsu07g00558 584 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 307 541 IPR036134 -
Tsu07g00558 584 TIGRFAM crypto_DASH: cryptochrome, DASH family 93 531 IPR014133 GO:0003913|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00558 Tsu-Chr7 4367873 4372199 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00558 K25656 - gmx:100783312 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00558 07 4367873 4372199 Tsu07g00558 07 4367873 4372199 ECH