Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00550 ATGGAACCGTCATCATCATCGGCAATAGCACAACAAACATGGGAATTGGAAAACAACATCATGCCAATGGAAACACCCGCAGACGATTCAATCTTCCATTACGACGAAGCTGGCCAAACTCAATTCCAACGTGATAAACCATGGGCAAACGATCCTCACTATTTCAAACGAGTTAAGATCTCTGCACTCGCTCTTCTTAAGATGGTTGTTCACGCTCGTTCTGGTGGAACAATCGAAGTTATGGGTCTTATGCAAGGTAAAACCGATGCCGATTCTATCATCGTTATGGATGCTTTTGCTTTACCCGTTGAAGGTACTGAAACTCGTGTCAATGCTCAAGCTGATGCTTATGAATACATGGTTGATTATTCTCAGACCAACAAACAGGCTGGGAGGTTGGAGAATGTTGTGGGATGGTATCATTCTCATCCTGGTTATGGTTGTTGGCTTTCGGGGATTGATGTCTCGACACAGATGTTGAATCAGCAATTTCAGGAGCCATTTTTGGCAGTTGTGATTGATCCGACGAGGACTGTTTCTGCTGGAAAAGTTGAGATTGGAGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCGGATGATCCTATTTCTGAGTATCAAACTATTCCTCTTAATAAGATTGAAGATTTTGGTGTTCATTGCAAGCAgTATTATTCCTTGGATATCACTTACTTTAAGTCTTCTCTTGATTCACACCTTTTGGATCTTCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTTTATTGGGCAACGGAGACTATGTAGCTGGACAAATCTCGGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAATTGGCACACTCACGTTTTGGGCCACTGGTAGCACCTTCACCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATCACTCGAGATAGTGCAAAGATAACAGTGGAGCAAGTACATGGTTTAATGTCACAGGTAATCAAGGACACCTTGTTCAACTCAGTTCATCAAGCTAACAAGTCTCGTACAGAAACATCTGACCCTGAACCAATGATTGAAAGCTGA 1068 0.4204 MEPSSSSAIAQQTWELENNIMPMETPADDSIFHYDEAGQTQFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLVAPSPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDTLFNSVHQANKSRTETSDPEPMIES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00550 355 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 55 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu07g00550 355 SUPERFAMILY JAB1/MPN domain 57 194 - -
Tsu07g00550 355 Gene3D Cytidine Deaminase, domain 2 3 260 - -
Tsu07g00550 355 CDD MPN_RPN11_CSN5 47 319 - -
Tsu07g00550 355 PANTHER BNAC07G13420D PROTEIN 22 347 IPR037740 GO:0004222|GO:0008180
Tsu07g00550 355 Pfam Cop9 signalosome subunit 5 C-terminal domain 254 334 IPR040961 -
Tsu07g00550 355 MobiDBLite consensus disorder prediction 287 307 - -
Tsu07g00550 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 22 347 - -
Tsu07g00550 355 ProSiteProfiles MPN domain profile. 58 195 IPR037518 -
Tsu07g00550 355 SMART pad1_6 57 194 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00550 Tsu-Chr7 4310042 4314382 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00550 K09613 - gmx:100784909 678.707