Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g00535 | ATGGATCAAGTCGATTTCAATGCTCCTCATTCCATGGGAACAACTATCATCGGCGTTACCTACAACGGCGGTGTCGTTCTTGGAGCCGATTCTCGAACTAGCACAGGTGTATATGTTGCCAATCGTGCATCCGACAAAATCACAAAGCTCACCGACAATGTGTACGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTTTCTGACTATGTGCGCTACTTCCTCCACCAACACACGATTCAGCTTGGACAACCCGCAACAGTCAAAGTTGCTGCAAACCTTGTTCGGCTTCTCGCATATAACAACAAGAATAATTTACAAACCGGTTTAATTGTTGGTGGTTGGGACAAGTACGAAGGTGGTCAGATTTATGGAGTTCCTCTAGGTGGAACAATTGTACAGCAACCTTTTGCTATTGGAGGATCTGGCTCCAGTTACTTGTATGGATTTTTTGACCAGGCTTGGAAAGAAGGAATGACCCAGGATGAAGCTGAGGACCTAGTCAAAAAGGCAGTTTCACTTGCCATTGCTCGTGATGGTGCTAGTGGTGGAGTTGTCCGAACAGTCATTATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCAGGCGATCAACTTCCAATATGGCATGACGAACTTGAGTCTCATAACTCATTGCTAGACATTCTTGGTGCTCCAGAGCCCATGAACATATGA | 699 | 0.4607 | MDQVDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITKLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNNLQTGLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTQDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPIWHDELESHNSLLDILGAPEPMNI | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g00535 | 232 | Pfam | Proteasome subunit | 12 | 192 | IPR001353 | GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | PRINTS | Proteasome component signature | 21 | 36 | IPR000243 | GO:0004298|GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | PRINTS | Proteasome component signature | 142 | 153 | IPR000243 | GO:0004298|GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | PRINTS | Proteasome component signature | 153 | 164 | IPR000243 | GO:0004298|GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | PRINTS | Proteasome component signature | 178 | 189 | IPR000243 | GO:0004298|GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 14 | 213 | IPR029055 | - | |
| Tsu07g00535 | 232 | PANTHER | PROTEASOME SUBUNIT ALPHA/BETA | 6 | 227 | - | - | |
| Tsu07g00535 | 232 | ProSitePatterns | Proteasome beta-type subunits signature. | 17 | 64 | IPR016050 | GO:0005839|GO:0051603 | |
| Tsu07g00535 | 232 | ProSiteProfiles | Proteasome beta-type subunit profile. | 13 | 192 | IPR023333 | - | |
| Tsu07g00535 | 232 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 9 | 215 | IPR029055 | - | |
| Tsu07g00535 | 232 | CDD | proteasome_beta_type_6 | 14 | 201 | - | - | |
| Tsu07g00535 | 232 | PANTHER | PROTEASOME SUBUNIT BETA | 6 | 227 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu07g00535 | K02738 | - | gmx:100305513 | 441.81 |