Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00496 ATGTCTCATCATAATCACCTTGATCAAAATCATCAACAGAATATGCTCAAACTCGACGAAAGGATGGTTCGAGCTCTTGTTACCGTCTTTGGAATGCAAAACAATGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTGGTTGAAAAACTTGGTTTGATCTATGGTTCTGATCAGAAGGATAACAAGGCCTTTCAagacgacgatgatgatgaagaagtgGTTGTGGAAGAGGTGCTTGGTGAATTGGAAGACATGTCAAAGAGAAGTGAGTTATTACTTGAagcttttaaaatatttgatgagGATGGTGATGGATATATTGATGCAATGGAGTTGAAGAGAGTTCTTGATTGTTTGGGTTTGGATAAGGGTTGGGATATGAATACAATTGAAAGGATGGTGAAGGTTGTTGATTTGAACTTTGATGGAAAAGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAG 468 0.3419 MSHHNHLDQNHQQNMLKLDERMVRALVTVFGMQNNGRIKKENARQVVEKLGLIYGSDQKDNKAFQDDDDDEEVVVEEVLGELEDMSKRSELLLEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIERMVKVVDLNFDGKVDFGEFELMMG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00496 155 Gene3D - 1 155 - -
Tsu07g00496 155 PANTHER CALCIUM-BINDING PROTEIN CML42 61 154 - -
Tsu07g00496 155 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Tsu07g00496 155 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Tsu07g00496 155 SUPERFAMILY EF-hand 21 154 IPR011992 -
Tsu07g00496 155 SMART efh_1 91 119 IPR002048 GO:0005509
Tsu07g00496 155 SMART efh_1 129 155 IPR002048 GO:0005509
Tsu07g00496 155 CDD EFh 92 150 IPR002048 GO:0005509
Tsu07g00496 155 Pfam EF-hand domain pair 92 154 IPR002048 GO:0005509
Tsu07g00496 155 ProSiteProfiles EF-hand calcium-binding domain profile. 125 155 IPR002048 GO:0005509
Tsu07g00496 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 61 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00496 Tsu-Chr7 3878595 3879068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00496 92 154 EF-hand Containing Proteins AT4G20780 57.143 3.68e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00496 - - adu:107470962 221.09