Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00491 ATGTTGGATTCATGTGACAAAATGGGCAACGTTGGTTATTCTACCTTGCTCTTCCAACAACTCCTTCACCCAAATATCTTCTCCTACAATGCCATTATCAGAACCTACACACACAATCGCCACTATTCGTTAGCAATCACTCGTTTCATCGAAATGCTCACACATTCAACAACATCAGTTTTTCCAGACAAATTCACGTTCCAGTTTGTGATTAAATCTTGCGCGGGGATTCTTTGTCAGCGTCTTGGTATGCAGGTTCATGGGCTAGTTTTCAAATTTGGGACTAATTCGCAATGTATAACGGAGAATGCATTGATTGGTATGTATATGAAATGTGGGGATTTGAAAAATGCGTGTaaggtgtttgatgaaatggGTCATAGGGATGTGGTTTCTTGGAATAGTTTGATATTTGGGTATGTGAAATTGGGGCAGATGAAGAGTGCAAGGAAACTGTTTGATGAAATGCCTGTTAGGACAATTGTGTCATGGACAACTATGATAACTGGGTATGGTAGAGCAGAGTGCTATGCTGATGCATTGGATGTTTTTCGGGAGATGCAAATGGTGGGTATTGAACCTGATGAGATTAGTATTATAGCTGTTTTGCCGGCTTGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACAAGTATGCTGAGAAAAACGGGTTTTTGCAGAAGACTGAAATATGCAATGCGTTGATTGAAATGTATGCTAAGTGTGGTTGTATCGATGAAGCTCGGAGCATGTTTGATCAGTTGGTTCAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGTTAGCTAATCATGGAAAAGGTTATGAGGCAATTCAACTTTTTGAAGAAATTCGGAAGACAAGGGTAGCTCCTAATGAGATAACCTTTCTTGGTGTTTTGTTGGCTTGCTCTCATGCAGGCTTGTGGGATGAGGGGttgaaatattttgatgttaTGCGGATGGATTATCATATAGAACCAGAAATTGAGCATTATGGTTGCCTCGTTGATCTACTTGGACGCTCAGGATGCCTTGATCAGGCTCTTGACACAATATTAAAGATGCCAATAAAGCCGGATTCAAGGATATGGAACTCTTTGTTAAGCTCTTGTAGGATTCATCGCAATCTTGAGATTGCTGTCATTGCAATGCAGCAGCTCGTGGAGCTTGAGCCAGAGGAATCTGGGAACTATGTTTTGCTCGCCAACCTATATAAAGAACTTGGCAAGTTGGAAGATGTatcaaatattagaaaattCATAAGAAACAAGAGGATTAAGAAAACCCCGGGGAGTAGTTCAATTGAGGTTAACAATGTAGTTCAAGAATTTGTATCAGCTGACGTCTCAAAGCCATTTTCACAAGAGGTCTTTCTGATCCTAGAAGGGCTGGCTTTACACCAAACTAGAACTGATGACTTGATGGAACTTGTCAAAGAAGATGCTGATAACAGTTCACCATAA 1476 0.3984 MLDSCDKMGNVGYSTLLFQQLLHPNIFSYNAIIRTYTHNRHYSLAITRFIEMLTHSTTSVFPDKFTFQFVIKSCAGILCQRLGMQVHGLVFKFGTNSQCITENALIGMYMKCGDLKNACKVFDEMGHRDVVSWNSLIFGYVKLGQMKSARKLFDEMPVRTIVSWTTMITGYGRAECYADALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHKYAEKNGFLQKTEICNALIEMYAKCGCIDEARSMFDQLVQKDVISWSTMIGGLANHGKGYEAIQLFEEIRKTRVAPNEITFLGVLLACSHAGLWDEGLKYFDVMRMDYHIEPEIEHYGCLVDLLGRSGCLDQALDTILKMPIKPDSRIWNSLLSSCRIHRNLEIAVIAMQQLVELEPEESGNYVLLANLYKELGKLEDVSNIRKFIRNKRIKKTPGSSSIEVNNVVQEFVSADVSKPFSQEVFLILEGLALHQTRTDDLMELVKEDADNSSP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00491 491 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 485 - -
Tsu07g00491 491 Pfam E motif 378 440 IPR046848 -
Tsu07g00491 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 159 IPR002885 -
Tsu07g00491 491 PANTHER OS05G0439300 PROTEIN 1 485 - -
Tsu07g00491 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Tsu07g00491 491 TIGRFAM PPR: pentatricopeptide repeat domain 162 196 IPR002885 -
Tsu07g00491 491 TIGRFAM PPR: pentatricopeptide repeat domain 131 157 IPR002885 -
Tsu07g00491 491 TIGRFAM PPR: pentatricopeptide repeat domain 103 130 IPR002885 -
Tsu07g00491 491 TIGRFAM PPR: pentatricopeptide repeat domain 233 261 IPR002885 -
Tsu07g00491 491 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat family 160 207 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat family 24 75 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat family 260 307 IPR002885 -
Tsu07g00491 491 Gene3D Tetratricopeptide repeat domain 213 326 IPR011990 GO:0005515
Tsu07g00491 491 Gene3D Tetratricopeptide repeat domain 327 462 IPR011990 GO:0005515
Tsu07g00491 491 Gene3D Tetratricopeptide repeat domain 1 89 IPR011990 GO:0005515
Tsu07g00491 491 Gene3D Tetratricopeptide repeat domain 91 212 IPR011990 GO:0005515
Tsu07g00491 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 260 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat 103 128 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat 335 359 IPR002885 -
Tsu07g00491 491 Pfam PPR repeat 131 157 IPR002885 -
Tsu07g00491 491 SUPERFAMILY TPR-like 109 417 IPR011990 GO:0005515
Tsu07g00491 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00491 Tsu-Chr7 3844328 3845848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00491 1 468 Glycoside Hydrolase AT3G49170 31.130 7.23e-82 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00491 - - cam:101511241 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00491 07 3844328 3845848 Tsu07g00491 07 3844328 3845848 ECH