Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00485 ATGATTTTGAATGACCAAATATCTTTTAAAGTTGtttctttaattgttgcagttaaaaatatttttaacaatttatataGTCAAAAGCTTGGTGGTCTTTCGAAACTTGGTTTAGATGAGAAAGAAGTTCGTGTGAAAGTCACGACGAGTAATGAAGCGGTGACTCtttcaattgaaaaaaacaatCAACTTTTGATTGAAAAACTAGATGGCAAGCGTTTTGACACTGTTGATTCTAAGCCATCATTGGGAGAAAAGCGTACCTCTAGCCTTGGTTTAAAGGATGCTAGTAAATCTAATGGTGGTTTGGTCTCTATTTCCTCCGACAAGACTTTGCCTCAAGCCAAAGAGAAAGAGAATGGGGTTTATAAGGCTTCTTTGGCTAAACAAAAATCATCTACTAAACTACCACATTGCTCTAGAGATGATTTGGAAATGAAAGAAATTTCTAAAACTGGAGGAAATGTCTCTAATGATAAGACCGTTTTGAAGTCTAAGATTGATTCGGAAACGGGTGGACGTGATATTGTTGGTATCTCCGATCGACAAATCAACAAGCGGTTAGGGGAGGGCAAGACTTCTGAGAAGGAAAAGTATGGTGTTTCTAGTGCAAAGATAACAAATAATGTTCAAAATCGAAGCAACtatgatgatgacgatgatgtGAAGGACTTCCCTTCAAAAAGGCTAAAGATTGGCACAGTGCCAACAAAACTCTCTGGTGACAAGTTTCCTGACAGGCAAATCAACAAGCGATTGAGGGAGAGCAAGGCATATGAAGAGGAAAAATATGGCGTTTCTAGTACGAAGATAtcaaataatgtacaaaatcgAAGGAACtatggtgatgatgatgtgaaGGAAGTCCCTTCGAAAAATCTAAAGATTGACACGATGCCAGCTAAATTCTCTGGTGACAAGTTGCGGAAAGAATCGTCTACACCTTCTCCAAACTTGGAGCACAAGCTAGACTACCGTGTAAAGGAAGTTACTCAAAGACCTGAAGTTGATAGAAGCAAATGGTTTAAGCCAATGcCTTGGGAGGAAAGCATGAAAGATGCTTATAAGCAAAGGAGACTTGTGCTGCTTGAAAATTTGGATCCTTCTTTAACTTCATCAGAAGTACAGGATATTATTTGGCATGGCTTTAAAGAAAGATGTACTGCAAAGATGATCCAGAAAACCACATATTCTAGTCCTCATTCTGGTCAAGcttttgttatatttaaaagaaaggAAGCAGCAGAGTCGGTTATTAGAAAATTAGAGGAGGGCTGTTTGTTGATGTCAAATGGGCGCCCACTTGTCGGAAGCTTTGGACTCCCTTGCTTTCCGGAAAAGAAGCGAACATTTTATGGTCATTATGCTATCGATCAACCTCGACAACGTGAGATGAAAGACGCAGTATCGACTTCACATTGTTCTCAGGCCAACAACATTGAATATGATATGGCTGTAGAGTGGTGTTTACTACAAGAAAGAGAAGACAAAACTTGGAGAAAATTGTATCagCGACAAAGCGAGGAGTTAAGCAAACTCAAAGCCAAGTTGAAGTCTAAAATCTAA 1566 0.3627 MILNDQISFKVVSLIVAVKNIFNNLYSQKLGGLSKLGLDEKEVRVKVTTSNEAVTLSIEKNNQLLIEKLDGKRFDTVDSKPSLGEKRTSSLGLKDASKSNGGLVSISSDKTLPQAKEKENGVYKASLAKQKSSTKLPHCSRDDLEMKEISKTGGNVSNDKTVLKSKIDSETGGRDIVGISDRQINKRLGEGKTSEKEKYGVSSAKITNNVQNRSNYDDDDDVKDFPSKRLKIGTVPTKLSGDKFPDRQINKRLRESKAYEEEKYGVSSTKISNNVQNRRNYGDDDVKEVPSKNLKIDTMPAKFSGDKLRKESSTPSPNLEHKLDYRVKEVTQRPEVDRSKWFKPMPWEESMKDAYKQRRLVLLENLDPSLTSSEVQDIIWHGFKERCTAKMIQKTTYSSPHSGQAFVIFKRKEAAESVIRKLEEGCLLMSNGRPLVGSFGLPCFPEKKRTFYGHYAIDQPRQREMKDAVSTSHCSQANNIEYDMAVEWCLLQEREDKTWRKLYQRQSEELSKLKAKLKSKI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00485 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 442 IPR000504 GO:0003723
Tsu07g00485 521 MobiDBLite consensus disorder prediction 239 288 - -
Tsu07g00485 521 MobiDBLite consensus disorder prediction 244 264 - -
Tsu07g00485 521 Coils Coil 500 521 - -
Tsu07g00485 521 MobiDBLite consensus disorder prediction 104 139 - -
Tsu07g00485 521 Gene3D - 345 439 IPR012677 -
Tsu07g00485 521 PANTHER PROTEIN ANTI-SILENCING 1 15 519 - -
Tsu07g00485 521 SUPERFAMILY RNA-binding domain, RBD 356 429 IPR035979 GO:0003676
Tsu07g00485 521 MobiDBLite consensus disorder prediction 187 222 - -
Tsu07g00485 521 PANTHER PROTEIN ANTI-SILENCING 1 15 519 - -
Tsu07g00485 521 MobiDBLite consensus disorder prediction 80 99 - -
Tsu07g00485 521 CDD RRM_SF 361 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00485 Tsu-Chr7 3797610 3810517 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00485 - - cam:101508998 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00485 07 3797610 3810517 Tsu07g00485 07 3797610 3810517 ECH