LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g00481	ATGGAATTGGTGGCCAAGTATATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATCGACTCCAGCACGCAAATGGCGCTGTTGTCTTGGCAACTACAAAAGTATTTCTGCACTTGACTTTATCTATGGCCGATGTACATCAGCAGGTCTATGAGCGTATCAAAGCTCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCGGAACAATCTTATGCAATTCTAAGCCACCTGCATCTCTTGGTGATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTAACTGCAGTTGCAAATGAAAGTAACACTTATGAGATAGTGACAGAATTATGCGAATATGCGGCAAATGTTGACATTCCAATTGCAAGGGAATCAATTCGGGCTGTTGGAAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTGGAGATGGAAAAGGATTATGTTACATCTGAAGCTCTGGTGCTTGTGAAAGATCTTCTAAGAAAATATCCTCAGTGGAGTCAGGATTGTATCGCTGTTGTTGGGAATATCAGTAGCAACAATGTCCAAGAACCTAAGGCTAAGGCAGCTCTCATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAAAGTCTGGTTGAAAATTGGGATGAGGAGCATTCTGCCGAGGTCCGCTTACATCTTCTTACTGCTGTAATGAAGTGTTTCTTTAAGAGACCCCCTGAGACTCAGAAAGCATTAGGAGCTGCACTGGCTGCTGGTCTTGCTGACTTTCACCAGGATGTTCATGACAGGGCCTTATTTTATTACAGGCTTCTACAATACAATGTATCAGTGGCAGAGAGTGTGGTGAACCCTCCAAAACAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGCGAAGTTAAAGATCGcatatttgatgaatttaacAGTTTGTCTGTTGTATACCAAAAGCCTTCTTACATGTTCACTGATAAGGAGCACCGAGGGACATTGGAGTTTTCAGATGAACTTGGAAATCTATCTATTAATGCAGAATCCGGAGATTCTGTTGTTCCTGCTCAGAGAGTGGAGGAAAATGACAAGGATCTGCTTCTAAGTACCACGGAAAAAGATGATGTTAGAGATCCTGGTAGCAATGGTTCTGCCTACAATGCTCCTTCGTATAACGGGTCTACCCCTCCCGCGACTTCACAGCCGCTTGCAGATTTGGCATTTTCAAGTACCAGCGCCACTGGCCAAGCTCCAGCATCTGGCTTAGCAATTGATGATCTGCTTGGTTTAGATTTTTCAGTTGGGACTGCAACCGCACCGTCACCTCCTCCATTGACCCTCAACCCAAAAGCTGTACTGGATCCCGGCACATTTCAGCAGAAATGGCGTCAACTACCAATATCCTTATCAGAGGAATATTCTTTAAGTCCCCTTGGAATTGCATCATTGATAACTCCCAATGCACTCCTACGGCACATGCAAAGTCATTCGATACAGTGCATTGCATCCGGCGGTCAGTCTCCTAATTTCAAGTTCTTTTTCTTCGCTCAAAAAGCGGAAGAAGCATCAATTTATCTTGTAGAGTGTATAATCAACACTTCATCAGCAAAGTCACAGATCAAAATAAAAGCCGATGACCAAAGCTCATCGCAGGCATTCTCAACTTTATTCCAATCAGCTTTGTCCAAATTTGGTTTGCCCTGA	1800	0.4244	MELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSNNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTLEFSDELGNLSINAESGDSVVPAQRVEENDKDLLLSTTEKDDVRDPGSNGSAYNAPSYNGSTPPATSQPLADLAFSSTSATGQAPASGLAIDDLLGLDFSVGTATAPSPPPLTLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPLGIASLITPNALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEEASIYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g00481	599	Pfam	Adaptin N terminal region	2	307	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Tsu07g00481	599	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	480	593	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Tsu07g00481	599	SUPERFAMILY	ARM repeat	2	354	IPR016024	-
	Tsu07g00481	599	MobiDBLite	consensus disorder prediction	415	435	-	-
	Tsu07g00481	599	Gene3D	-	1	365	IPR011989	-
	Tsu07g00481	599	Gene3D	-	467	597	IPR012295	-
	Tsu07g00481	599	PANTHER	AP-4 COMPLEX SUBUNIT BETA-1	1	597	-	-
	Tsu07g00481	599	MobiDBLite	consensus disorder prediction	380	435	-	-
	Tsu07g00481	599	SMART	B2_adapt_app_C_2	477	594	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Tsu07g00481	599	PIRSF	Beta_adaptin	1	599	IPR016342	GO:0015031\|GO:0030276
	Tsu07g00481	599	MobiDBLite	consensus disorder prediction	389	411	-	-
	Tsu07g00481	599	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	1	597	IPR026739	GO:0016192

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g00481	Tsu-Chr7	3749453	3755722	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g00481	-		-	gmx:100801153	1090.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g00481	07	3749453	3755722	Tsu07g00481	07	3749453	3755722	ECH