Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00457 ATGCATGTCATTGCAATGGATTTCTATGGAAACAAAACCCTCTTAACCTTAATGgacaaagaaaaaacagaacaagAATCTCCCAACATTCACCTTCGTGTCCAAATCCAAACTCACaaagaaacaaatgaacaaGAACATGTTCAATTTAGTCCACCAAGAACTTCTACTAATTTTCCACAATCACCATGGACACTTTCCCATCTTCCATCTCCTCCCCCTTCATTGCTCTACCATTGTATCGCCTCACTCCACCGTCACGAAGGAAACATCTATTCCATTGCAGTTTCCAAAGGTTTCATCTTTACCGGATCCAACAGTAGTCGAATTCGTGTTTGGAAGCAACCAGATTGCATGGACAAAGGCTACCTCAAATCAAGTTCCGGCGGTGTTCGCGCCATTTTAGCTTGTAACAACATGGTTTTCTCCACACACAAAGATCACAAAATCAGAATATGGAACTTCAATGTTTCAGAAAACTTCAAATCCAAGAAAGTAGCTACTCTTCCTAGAAAAACCAAAAACTCCATTCTAAACTTCAACAGAACCAAACACAACAATCACAAACATAAAGAAACCATTTCTTGCATGGCTTATTATCATTCAGAAGGATTATTATACACTGGCTCTCATGATAGAACAGTCAAAGCTTGGAGAATCTCTGATAGAAAATGTGTTGACTCATTTCTAGCACATGAAGATCATGTAAATTCAATCTTAGTAAACCAAGATGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTATACAcagaaaactcacacacattaACAATGACACTAAAGTTTCAACCTTCACCTGTTAATGCACTTGCACTGAGTTCATCATTCAACCATTGTTTCCTCTATTCAGGAACTTCAGATGGAATGATAAATTTCTGGGAGAAGGAAAGGCTGTGTTATAGATTTAACCATGGAGGGTTTTTGCAGGGTCATCGTTTCGCGGTACTTTGTGTCGAAACGGTAGGGAACATGATATTTAGTGGATCAGAGGATACAACAATAAGAgtttggagaagagaggaagaaAGTTGTTATCATGAATGTTTGATGGTTTTGGATGGACATAGAGGACCTGTTAGATGTTTGGCTGCTTGTCTTGAGATAGAGAAAGTTGTTGTAGGGTTTTTAGTTTATAGTGCTAGTTTGGATCAAACATTTAAGGTTTGGAGAATTAAGGTTTTTTCTGATGATGAAAATATGTGTTTGGATGTTGTTAGTGATAATAATAAGTGTGGAGGGAAAGTTAAGATTAGGGAGTATGATATGAGTCCTGTTTTGTCTCCTTCTTGGGTAGAGAAGAAACTTGGTAGTCCCTTTCACTAA 1368 0.3582 MHVIAMDFYGNKTLLTLMDKEKTEQESPNIHLRVQIQTHKETNEQEHVQFSPPRTSTNFPQSPWTLSHLPSPPPSLLYHCIASLHRHEGNIYSIAVSKGFIFTGSNSSRIRVWKQPDCMDKGYLKSSSGGVRAILACNNMVFSTHKDHKIRIWNFNVSENFKSKKVATLPRKTKNSILNFNRTKHNNHKHKETISCMAYYHSEGLLYTGSHDRTVKAWRISDRKCVDSFLAHEDHVNSILVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQPSPVNALALSSSFNHCFLYSGTSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVETVGNMIFSGSEDTTIRVWRREEESCYHECLMVLDGHRGPVRCLAACLEIEKVVVGFLVYSASLDQTFKVWRIKVFSDDENMCLDVVSDNNKCGGKVKIREYDMSPVLSPSWVEKKLGSPFH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00457 455 CDD WD40 80 405 - -
Tsu07g00457 455 Gene3D - 19 183 IPR015943 GO:0005515
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Tsu07g00457 455 SUPERFAMILY WD40 repeat-like 79 407 IPR036322 GO:0005515
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Tsu07g00457 455 PANTHER OS01G0232200 PROTEIN 6 449 - -
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 114 IPR001680 GO:0005515
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 362 IPR001680 GO:0005515
Tsu07g00457 455 Gene3D - 319 448 IPR015943 GO:0005515
Tsu07g00457 455 Pfam WD domain, G-beta repeat 362 404 IPR001680 GO:0005515
Tsu07g00457 455 Pfam WD domain, G-beta repeat 322 352 IPR001680 GO:0005515
Tsu07g00457 455 Pfam WD domain, G-beta repeat 273 308 IPR001680 GO:0005515
Tsu07g00457 455 Pfam WD domain, G-beta repeat 188 218 IPR001680 GO:0005515
Tsu07g00457 455 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Tsu07g00457 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Tsu07g00457 455 Gene3D - 184 318 IPR015943 GO:0005515
Tsu07g00457 455 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 449 IPR045182 -
Tsu07g00457 455 SMART WD40_4 222 261 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 360 405 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 316 353 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 117 154 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 181 219 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 268 309 IPR001680 GO:0005515
Tsu07g00457 455 SMART WD40_4 77 114 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00457 Tsu-Chr7 3528573 3529940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00457 190 409 Miscellaneous Gene Families AT5G08390 23.789 1.68e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00457 - - mtr:MTR_3g110185 816.994