Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00421 ATGGAAACTGATGATGAGATTGAAGTTGAAGAGGAAGAGGGTATCCCCGAAACAGACGAATTACAGATCGATCAGTTCCTCTTcgaggttgaagaagaagatgatgaacaatTCCATCACTCTCTAGACCACTTTTCCTCTCCATCTTCTTATTCCTCTTCCCAGGACCAACCTAATGATGACATTGTTATTGGTTCATCAGATGAATTCACTTTCAATACCAGTATCGCTTCGTTGCACACATATCTTGGAGATGTTGAAGACACACGCCACATAACTGCTTTTTTGGATGGTGCTGCTATATGCAACCTCCCACTCTTTTGTCTCCAAGGAGTTGTACTCTTTCCCGGGGCTACTCTTCCCCTTAGGGTTACTGTTTCTCGTTTTGTGACTGCTATTGAGAGAGCTTTGAGTCAAGTTGATGTTCCTTACACCATTGCTGTGATTCGGGTTCACAGGGAAACCGGAAGTTTTACGATGAAAGCGGCAAGCATTGGGACAACTGCTGTGATTCGACAATATGGGCGTCTAGAGGATGGTTCACTGAATGTGGTTACCCGTGGACAACAACGATTTCGCCTAAGGCGGTGTTGGAATGACGTGGACGGAGTGCCTTATGGAGAGATCCAAATTATCGAGGAAGATCTACCCTTGAGAATTCCAAGGGATGCTTTTGGCAAATCAGCATCATCAAGTAATATGATTTGCAGCCACGTTAAAGCGCACGCCTTAAATGGGGAAAATGATTCAGAAGCCAATTCAGACGAGGGTTTCAAGAGTAAGTTTTCATCAATTGAAGGGAAAACTCACCTATCAGTCGCTGGATGCAGTTATGCGTCTGATACGATCGATGTATCAGCAAACAACAGTGATGTTAACTCTATACATAAGTCAGATCAGGAAATAAGATCCAATTTGGATTTGAGCATTGAAAACTGTTCCACGTCTGGAAAGCAGTCGTCCAAAGAAGATCTTAATAGATGCTTGAAGAATATACCATCGCATAAAATTTCAAATGCATTTTTGCCCCATTGGGTATATCGTATGTATGACTCCTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAAGCAAATAGTTGGGTTGCCTAGTATGGATAGTCTCATCAAGAGGCCTGATgttttgtcatttcatattgCTAGTAAAATACCTGTTTCTGAGTCCACAAGGCAACAACTTTTGGAAATCGACGGCATCGTGTATAGATTGCGCAGGGAAATCGAATTACTAGATAGCATTGATATTGTCCGATGTAGAATATGTCAGACTACAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAATGAGGGTCCTCTTGGTGCCTATGTGAATCCTGGTGGTTATGTACACGAGATAATGACTCTTTACAAGGCCAATGACTTATCTCTTGTTGGACACGCAGATACAGAATACAGCTGGTTTCCTGGATATGCATGGACAATCGCAAATTGTGCTACATGTGGAACACAAATGGGATGGCTTTTTACAACcaccaacaaaaaattgaagCCCAATTCATTTTGGGGTATTCGGAGCTGTCAAGTTGCAGAAGAAAAACCCCAAAACCTTTAG 1596 0.4079 METDDEIEVEEEEGIPETDELQIDQFLFEVEEEDDEQFHHSLDHFSSPSSYSSSQDQPNDDIVIGSSDEFTFNTSIASLHTYLGDVEDTRHITAFLDGAAICNLPLFCLQGVVLFPGATLPLRVTVSRFVTAIERALSQVDVPYTIAVIRVHRETGSFTMKAASIGTTAVIRQYGRLEDGSLNVVTRGQQRFRLRRCWNDVDGVPYGEIQIIEEDLPLRIPRDAFGKSASSSNMICSHVKAHALNGENDSEANSDEGFKSKFSSIEGKTHLSVAGCSYASDTIDVSANNSDVNSIHKSDQEIRSNLDLSIENCSTSGKQSSKEDLNRCLKNIPSHKISNAFLPHWVYRMYDSYWLAQRAADMWKQIVGLPSMDSLIKRPDVLSFHIASKIPVSESTRQQLLEIDGIVYRLRREIELLDSIDIVRCRICQTTIAKRSDMLVMSNEGPLGAYVNPGGYVHEIMTLYKANDLSLVGHADTEYSWFPGYAWTIANCATCGTQMGWLFTTTNKKLKPNSFWGIRSCQVAEEKPQNL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00421 531 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 422 513 IPR004910 -
Tsu07g00421 531 ProSiteProfiles CULT domain profile. 420 527 IPR034750 -
Tsu07g00421 531 Gene3D Peptide methionine sulfoxide reductase. 417 530 - -
Tsu07g00421 531 MobiDBLite consensus disorder prediction 33 60 - -
Tsu07g00421 531 Gene3D - 351 416 - -
Tsu07g00421 531 SUPERFAMILY PUA domain-like 103 418 IPR015947 -
Tsu07g00421 531 Pfam ATP-dependent protease La (LON) substrate-binding domain 103 418 IPR003111 -
Tsu07g00421 531 PANTHER PROTEIN CEREBLON 7 522 - -
Tsu07g00421 531 PANTHER CEREBLON 7 522 - -
Tsu07g00421 531 ProSiteProfiles Lon N-terminal domain profile. 104 419 IPR003111 -
Tsu07g00421 531 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g00421 531 SMART lon_5 103 419 IPR003111 -
Tsu07g00421 531 CDD CRBN_C_like 423 519 IPR034750 -
Tsu07g00421 531 Gene3D - 84 212 IPR046336 -
Tsu07g00421 531 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00421 Tsu-Chr7 3245868 3249848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00421 K11793 - gmx:100779918 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00421 07 3245868 3249848 Tsu07g00421 07 3245868 3249848 ECH