Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00416 ATGGAAGAAGTTACCGAACTTCACCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTATTTTGGTTGTGCCAGAAGATCTTGATATCTCAGATGGTTCCATTCTGTATGATGTTGATGAGCAAACTGTTCGAAGTCTAAATGGCTGCCGAGTGGCAGATCAGATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTACGCTGAGATGTTTGAAGTTTTGGGCTAAAAGACGCGGTGTTTATTCAAATGTTACGGGGTTCCTTGGAGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTTTGCCAGCTTTACCCTAATGCAATCCCCAGTATGCTGGTTTCTAGATTCTTCAGGGTCTATTCACAGTGGCGGTGGCCCAACCCTGTAATGCTATGCCCTATAGAAGAGAATGAACTGCAATTACCTATATGGGATCCTCGCAGAAACCATAGGGACAGGTACCACATTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCGACAAGCACTCTTCGTGTCATGATGGAACAGTTCTGCCATGGCAACAAGATTTGTGACGAAATTGAGCTTAACAAATCACAGTGGAGTGCACTTTTTCAGCCATATGTCTTTTTTGAGGCATATAAAAACTATTTACAAGTTGACATAGTTGCATTAGATGCTGATGATTTACTTTTGTGGAGAGGTTGGGTAGAATCCCGACTGAGACAGCTAACCTTGAAGATAGAGCGAGATACCCATGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATGCAGACACGTCCAAGCCTTGTGCACATTCTGCTTTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGCCAAGAAGGACAGCAATTTGATATACGTGAAACAGTTGATGAGTTCAGACAAGAAATTGTTTCGTATGGTTACTGGAAGCCGGGGATGGAAATTTATGTTTCTCATGTCCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGCACCCGAATGCCGAGGCATATAAACCATGCAACTGAGAAAGTGGGTGATGATACCAGAAAGTGCTACTCTGGATCTAGCTCATCTGAAAGGTGCATCAAGAGGAAGAGTAATTCTGAAATGTTGGATGTGAAGCCAGATAAACCAGAGAAGCGGACATCTGTTAGCCCACAGAGGCTAGAGTGTGTTTCACCTGAAAGTTGCACTAGTAAATTCGGTGGTACACCTCAAATGAGTATCGAGTGTATTGAAGAGGTTAGGCGAGATGGATCAACAACGGAAGATGTCGACAGCAATTGTAAAATCAAGTCATCTGATGGACTCTTAGGAAGTGGTGCAATTACTGAAGTAGGTGACATGCAGATAAATGGAACAGGTTTTGTTGGCTCCACACATGATAAACTGAAATCAAAGGCTTTAGAAGTTCTGAATGAGGTAAGCCTGCTGAATCAGCGGAAGAACTTTCCCTTGGGAAGTTGA 1554 0.4279 MEEVTELHPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSILYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYSQWRWPNPVMLCPIEENELQLPIWDPRRNHRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFCHGNKICDEIELNKSQWSALFQPYVFFEAYKNYLQVDIVALDADDLLLWRGWVESRLRQLTLKIERDTHGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRETVDEFRQEIVSYGYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHATEKVGDDTRKCYSGSSSSERCIKRKSNSEMLDVKPDKPEKRTSVSPQRLECVSPESCTSKFGGTPQMSIECIEEVRRDGSTTEDVDSNCKIKSSDGLLGSGAITEVGDMQINGTGFVGSTHDKLKSKALEVLNEVSLLNQRKNFPLGS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00416 517 Gene3D - 45 225 - -
Tsu07g00416 517 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 228 353 IPR011068 GO:0003723|GO:0016779|GO:0031123
Tsu07g00416 517 SUPERFAMILY Nucleotidyltransferase 2 74 IPR043519 -
Tsu07g00416 517 PANTHER POLY A POLYMERASE 1 425 - -
Tsu07g00416 517 Pfam Poly(A) polymerase predicted RNA binding domain 228 287 IPR007010 GO:0003723|GO:0043631
Tsu07g00416 517 Pfam Poly(A) polymerase predicted RNA binding domain 290 360 IPR007010 GO:0003723|GO:0043631
Tsu07g00416 517 Gene3D Poly(A) polymerase predicted RNA binding domain 227 343 - -
Tsu07g00416 517 PIRSF PolyA_polymerase 1 464 IPR014492 GO:0004652|GO:0005634|GO:0043631
Tsu07g00416 517 Pfam Poly(A) polymerase central domain 36 224 IPR007012 GO:0004652|GO:0043631
Tsu07g00416 517 PANTHER NUCLEAR POLY(A) POLYMERASE 4 1 425 - -
Tsu07g00416 517 SUPERFAMILY PAP/OAS1 substrate-binding domain 76 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00416 Tsu-Chr7 3202727 3209850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00416 K14376 - gmx:100802620 882.478