Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00397 ATGACTAAGAGACCTAAGAAATCAGATTCAAATAGAAGAGGAAAACGAAGAAAACCATCAGGTGTTTTTTCACCGTTGGATGTATCTTCTAGTGTTGTGTTCCGTTTACTATGTCCGGCTACTAGAATTGGTGGTGTAATTGGTAAAGGTGGTTCAATTATATCGCAAATTCGTCAAGAAACTGGTGTCAAAGTTAAGATTGAAGAGCCTGTCCCCGGGTGCGAAGAAAGGGTTATAACTTTTTTAAGTTCTGATAAAGAGAGTGAAGACGGTAGTGGTGAGCAAGGAAAGGAGGTTAATAATAATGACGAGAATGAAGGGAAGGAGAAGGATGACGAGGGGAAAGGTAACGGGGATGATAATGAAGATAAAGATTCTGTTTCGGTTGAAGATTTGCAGAGTGAGAAGGGGTATTCGACTGCTACTATTTTGAAGGCTGTAACACTAGTTTTTGATAGGATGGTTGAAGGAATATTGGATATAGGTGAAGCCGGTGATGAAAGTATTAAAGGTTCTTACTTTGCTTTAAGGCTACTCATCCTTTCTAATCAAGTTGGATGCATTTTGGGAAAGGGTGGTAGTGTGATAAAAAGAATGTCAGCTGAAAGTGGGGCACAGATTCGGATACTTCCTAAAGAAGAAATTCCCTCGTGTGCGTCGGATTCTGATGAGTTAGTTCAGGTCACAGGAGGAGTAGAAGTTGTCAGGAAAGCTCTTCAATTTGTTTTTCAGCAGCTTTTGGAAAATACAAACCGTGATCATGAATCTCTGTCTAGCAATCTTACCGGGCCGTCATCTCATTCATATGGTCAATTCCCACCAAATAAACGCAGTTTTCCTGGTCAAGGAGCATCTTTTGCTACTGGGGCTAATGAAATTCCTGTTTACCACTCTGCTCCTATGATTCCCAAATTTCATGAAGGTGCCATCCATGGTCGCATGAGGCCTTCACCGGAAATACTCACTTTCCGTTTATTGTGTCCTTCCGAAAATGTAGGAAATTTAATTGGCAAAGGTGGATCAGTTATAAAGACTATGCAACAAGAGACAGCTAGTGAAATCAAGGTTATAGAACCCATTCCGGGTTCAGAGGACTGTATTGTTGTCATATCTGGTCCAGCGCACCCAGATGATAGAATATCTCCTGTGCAAGAGGCTGTGTTTCGTGTGATAAATAGAATATCCAGGGCTATACCTGATGCCAAAGAACACAGTATGTTAGCAAGGGTTATTGTTTCTTCCAATAATGTAGGTTGTCTCCTTGGGAAGGGTGGTTGCATCATAGCTGAAATGAGGCATTTATCAGGTGCCCATATTCGTATGTTGGGAAAGGACAAGGGTCCAAAGTGTGTTtcagaagaagatgaagtaatTCAGGTAAGTGGAGAAATCGAGGCAGTGCACGATGCTCTTTTGCAAATAACCGCaagattaaaatatcatttctaTCGCGATGTATTTCCTTCTGCCAATTTTCCTTCAAATTCTGCATTTCTGGATCAACATTCTCCATTCCCACCTCATTTGGGAAGACAGGGACTTTCACCTCCTGGAATGTATTCTGACCGAGGTCCACATGTTGGTTTTCCCCTTGATGATCACCCTCcttttatgaataatatatatagacCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTAAGGGGATACTTGAAGGTGGTGGACACATGGGCTTGCCAGAATTTACAGGTGGTCCCAGAAGAATTTCTGGATTTGCAGGAGGAAGCCAACCAATTATTACAAATACCACTGTTGAAGTTGTTGTTCCACGCGCTTTGGTGCCTGTAATATACGGCGAAGATGGTGAATGCCTGAAACAAATACTCCAGATCTCTGATGCAAATGTTATTATTACCGATCCCAAACCTGGAGCTATGgaaactaaaattataatatctGGAACCCCGGAGCAAACTAATGCTGCACAGAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTATTGTTGA 2007 0.4091 MTKRPKKSDSNRRGKRRKPSGVFSPLDVSSSVVFRLLCPATRIGGVIGKGGSIISQIRQETGVKVKIEEPVPGCEERVITFLSSDKESEDGSGEQGKEVNNNDENEGKEKDDEGKGNGDDNEDKDSVSVEDLQSEKGYSTATILKAVTLVFDRMVEGILDIGEAGDESIKGSYFALRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPSCASDSDELVQVTGGVEVVRKALQFVFQQLLENTNRDHESLSSNLTGPSSHSYGQFPPNKRSFPGQGASFATGANEIPVYHSAPMIPKFHEGAIHGRMRPSPEILTFRLLCPSENVGNLIGKGGSVIKTMQQETASEIKVIEPIPGSEDCIVVISGPAHPDDRISPVQEAVFRVINRISRAIPDAKEHSMLARVIVSSNNVGCLLGKGGCIIAEMRHLSGAHIRMLGKDKGPKCVSEEDEVIQVSGEIEAVHDALLQITARLKYHFYRDVFPSANFPSNSAFLDQHSPFPPHLGRQGLSPPGMYSDRGPHVGFPLDDHPPFMNNIYRPGIPPHISERKPWGPKGILEGGGHMGLPEFTGGPRRISGFAGGSQPIITNTTVEVVVPRALVPVIYGEDGECLKQILQISDANVIITDPKPGAMETKIIISGTPEQTNAAQSLIQAFVMSEREYC 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00397 668 ProSiteProfiles Type-1 KH domain profile. 593 657 - -
Tsu07g00397 668 ProSiteProfiles Type-1 KH domain profile. 405 474 - -
Tsu07g00397 668 CDD PCBP_like_KH 176 243 - -
Tsu07g00397 668 ProSiteProfiles Type-1 KH domain profile. 31 88 - -
Tsu07g00397 668 SMART kh_6 404 479 IPR004087 GO:0003676
Tsu07g00397 668 SMART kh_6 30 155 IPR004087 GO:0003676
Tsu07g00397 668 SMART kh_6 172 247 IPR004087 GO:0003676
Tsu07g00397 668 SMART kh_6 592 662 IPR004087 GO:0003676
Tsu07g00397 668 SMART kh_6 319 392 IPR004087 GO:0003676
Tsu07g00397 668 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 593 662 IPR036612 GO:0003723
Tsu07g00397 668 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 6 532 - -
Tsu07g00397 668 MobiDBLite consensus disorder prediction 83 131 - -
Tsu07g00397 668 MobiDBLite consensus disorder prediction 254 275 - -
Tsu07g00397 668 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 402 487 IPR036612 GO:0003723
Tsu07g00397 668 CDD PCBP_like_KH 322 391 - -
Tsu07g00397 668 CDD PCBP_like_KH 33 80 - -
Tsu07g00397 668 ProSiteProfiles Type-1 KH domain profile. 173 242 - -
Tsu07g00397 668 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 313 375 IPR036612 GO:0003723
Tsu07g00397 668 CDD KH-I 595 658 - -
Tsu07g00397 668 MobiDBLite consensus disorder prediction 83 133 - -
Tsu07g00397 668 MobiDBLite consensus disorder prediction 1 25 - -
Tsu07g00397 668 CDD PCBP_like_KH 409 475 - -
Tsu07g00397 668 Pfam KH domain 177 240 IPR004088 GO:0003723
Tsu07g00397 668 Pfam KH domain 322 374 IPR004088 GO:0003723
Tsu07g00397 668 Pfam KH domain 409 475 IPR004088 GO:0003723
Tsu07g00397 668 Pfam KH domain 34 81 IPR004088 GO:0003723
Tsu07g00397 668 Pfam KH domain 595 658 IPR004088 GO:0003723
Tsu07g00397 668 Gene3D K Homology domain, type 1 28 90 IPR036612 GO:0003723
Tsu07g00397 668 Gene3D K Homology domain, type 1 319 397 IPR036612 GO:0003723
Tsu07g00397 668 Gene3D K Homology domain, type 1 591 666 IPR036612 GO:0003723
Tsu07g00397 668 MobiDBLite consensus disorder prediction 1 19 - -
Tsu07g00397 668 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 249 IPR036612 GO:0003723
Tsu07g00397 668 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 28 83 IPR036612 GO:0003723
Tsu07g00397 668 MobiDBLite consensus disorder prediction 254 284 - -
Tsu07g00397 668 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Tsu07g00397 668 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 6 532 - -
Tsu07g00397 668 Gene3D K Homology domain, type 1 170 250 IPR036612 GO:0003723
Tsu07g00397 668 Gene3D K Homology domain, type 1 403 481 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00397 Tsu-Chr7 3033967 3038453 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00397 K21444 - gmx:100777433 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00397 07 3033967 3038453 Tsu07g00397 07 3033967 3038453 ECH