Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00381 ATGGCCGTTTCAACCACTTTCTCCGCTCCCAAATTCGACTCTCTATTCCTcaaatcatcttcttcttcgaGGTCAACACCCTCCATTTCCAATCATGTATCACTTCTCGCGAAACCTAGAACTACCTTCATTCAAAAAGGGATTATTCGTTGTGATGCTCTAAATTCTAACGGAGCAGTTAAGACCGATGATAATGATCTTCAAACCAGCACCACCATTTCTGCTCTTGAGCTTCTCAAAACTTCTGGAGCTGATAGGTACACAAAGGAAAGGAGCAGCATTGTCGTCATTGGGCTCAGTGTGCACACTTGTCCAGTGGAAATGCGTGAAAAACTTGCCATTCCTGAAGCAGAATGGCCTAGAGCTATTGCGGAGCTTTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTTGCTCTATCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAACCAGTTCCGTTCCTGTTTCAGAGCTCTGCGAGCACCGGTTTTTACTTTACAACAAAGATGCCACACAGCACATTTTTCAAGTGTCAGCGGGTCTTGAGTCTCTGGTATTGGGAGAAGGTCAAATCCTTTCTCAGGTTAAACAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGAAGAAACATTAGTGGTCTATTCAAGCATGCAATAACTGTTGGAAAGAGGGTTAGAGCGGAGACCAATATTGCTGCTGGGGCAGTTTCTGTGAGCTCAGCTGCAGTTGAATTGGCCTACATGAAGCTACCCGATGCCTCACATGGTAATGCCAGGATGCTGGTTATAGGTGCTGGTAAAATGGGAAAGCTCGTGATCAAACATTTGGTTTCAAAAGGTTGTACTAGGATGGTTGTTGTCAATAGAACTGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCCTGTACCTGTGAAGCTGATGTCGTTTTCACCAGTACAGCATCAGAAAACCCATTATTCATGAAAGATGATGTCAAGGACCTTCCTCCAGCAAGTCAAGAGGTTGGAGGCCGTCGCCTTTTCATTGACATTTCTGTTCCTCGAAATGTTGGTTCATGTGTCTCAGATATTGACTCTGTGCGACTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGATTAAGAAAAGCAAGAGAAGCGCAGGTGATCATTGCTGAAGAGTTAAAGCAATTTGAAGCTTGGAGGGACTCGTTGGAAACTGTTCCTACCATTAAAAAATTGAGAGCCTATGCTGAAAGGATCAGGGTTGCTGAGCTTGAGAAATGCTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAGGATGCTTCATGGTCCAATGCAACATTTGAGGTGTGATGGAAGTGACGACCGGACTCTAACCGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGGTTCGAGCAAAGGTGGAACAAAACCAGAAGTGA 1629 0.4352 MAVSTTFSAPKFDSLFLKSSSSSRSTPSISNHVSLLAKPRTTFIQKGIIRCDALNSNGAVKTDDNDLQTSTTISALELLKTSGADRYTKERSSIVVIGLSVHTCPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCEHRFLLYNKDATQHIFQVSAGLESLVLGEGQILSQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPDASHGNARMLVIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCTCEADVVFTSTASENPLFMKDDVKDLPPASQEVGGRRLFIDISVPRNVGSCVSDIDSVRLYNVDDLKEVVAANKEDRLRKAREAQVIIAEELKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00381 542 Gene3D - 253 405 - -
Tsu07g00381 542 Pfam Shikimate / quinate 5-dehydrogenase 263 404 IPR006151 -
Tsu07g00381 542 Hamap Glutamyl-tRNA reductase [hemA]. 93 520 IPR000343 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 Gene3D - 92 252 IPR036343 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 418 522 IPR015896 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1 542 - -
Tsu07g00381 542 ProSitePatterns Glutamyl-tRNA reductase signature. 190 213 IPR018214 GO:0008883
Tsu07g00381 542 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 93 249 IPR036343 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 252 412 IPR036291 -
Tsu07g00381 542 TIGRFAM hemA: glutamyl-tRNA reductase 94 504 IPR000343 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 Coils Coil 305 325 - -
Tsu07g00381 542 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 97 247 IPR015895 GO:0008883|GO:0033014|GO:0050661
Tsu07g00381 542 CDD NAD_bind_Glutamyl_tRNA_reduct 94 416 - -
Tsu07g00381 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 542 - -
Tsu07g00381 542 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 416 505 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00381 Tsu-Chr7 2871969 2874839 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00381 K02492 - gmx:100782247 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00381 07 2871969 2874839 Tsu07g00381 07 2871969 2874839 ECH