Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00372 ATGGATTCAGTTATACATTTTCACTCATTTCACTACCATTCTCACAAAGAAGGTTCTAGAACTACACGTTGCTTCAGAACAAAACCTTTCATTCTATCTCCTCGCAATGTTGCAAAACTTGAATGCAATAGTTCTAAACAGTATTTGGAAACAGTTTTTTCCGTTTCGAAAATTGGAACTTCTGCTTTGAACGGTAAATCACAACAACGTTTTGAAAAAAAACCTAACGGAAATTCCAACACCATAGATTCATCCCCAaattgtttaagaaatttagagAAATTAGAGAGCAATAATCATCTTCGTAAATTAGTTCAAAATGGGAAATTATATGAAGGACTTAAGTTTCTTGAATGCATGAGTTACAAAGGCGAAATTCCCGATGTATTTGTTTGCAAAAACCTCATGCGTGGGTTTTGCAACACCGGTAAAACTAAGAAAGCTACACGAGTCATGGAAATTCTAGAAAGTTCATGTGCGGTTCCTGATGTTATAACCTACAATGTTTTAATTGATGGTTATTGTAAATCAGGGGAGATAGAGAAAGCTTTGCAGCTTCTAGAACGGATGGGTGTTTCGCCTGATGTGGTTACTTATAATACGATTTTGCATAGCTTGTGTGGTACTGAAAGATGGATGGATGCCAAGAGCTTATTGGCTGATATGCTTCGTAAGGGTTGTTCTCCTAATGTTGTTACTTTCAATACCTTGATTAACTTCTTGTGTCGAAAAGGTTTGCTTGATAGGGCCATTGATATCTTGGAGAAGATGCCGGAGCACGGTTGTACTCCCAATTCAATGAGTTACAACCCATTGCTTCATACGTTTTGTCAAGAGAAAAAGATGGATAGAGCAATCAAGTATTTGGAAATAATGGTGTCTAGAGGTTGTTACCCGGATATTGTGACCTATAATACTTTGCTTGCTGCTTTATGCAGAGATGGGAAGGTGAATGTTGCTGTTGAGCTGCTGAATCAGTTGAGTAGTAAAGGGTGCTCTCCTGATGTAATTACTTATAATACCATTATTGATGGACTTTCAAAGGTGGGGGCAACCGAGCATGCTGCGGAACTCTTGGATGACATGTGTAGGAAAGGTCTTCAACCCGATTTAGTTACATATTCTTCACTGATTCGGGGATTTTTTCGTGAGAGAAAGGTTGATGGTGCTATCAAAACTTTCCGCGACTTGGAAAGATCACGCATTAGGATCGATGCTTTCCTTTACAACTCATTCGTGGTTGGACTCTGTAAGGCTCGGCAAACTAGTTATGCTATTGATCTATTGGCCCATATGATAGATAAAGGATGCAAACCTACTGAAGATACATATACCATTCTTATTAGAGGCATAGCTTGTGAAGGATTAGCTGAGGAGGCTCTGGAGTTGTTTAATGAGTTGTGCTCCAGAGGATTTGTGAAGAAAAGTTCTGCAGAAAAGGCACTAGTCAATATATAG 1458 0.3834 MDSVIHFHSFHYHSHKEGSRTTRCFRTKPFILSPRNVAKLECNSSKQYLETVFSVSKIGTSALNGKSQQRFEKKPNGNSNTIDSSPNCLRNLEKLESNNHLRKLVQNGKLYEGLKFLECMSYKGEIPDVFVCKNLMRGFCNTGKTKKATRVMEILESSCAVPDVITYNVLIDGYCKSGEIEKALQLLERMGVSPDVVTYNTILHSLCGTERWMDAKSLLADMLRKGCSPNVVTFNTLINFLCRKGLLDRAIDILEKMPEHGCTPNSMSYNPLLHTFCQEKKMDRAIKYLEIMVSRGCYPDIVTYNTLLAALCRDGKVNVAVELLNQLSSKGCSPDVITYNTIIDGLSKVGATEHAAELLDDMCRKGLQPDLVTYSSLIRGFFRERKVDGAIKTFRDLERSRIRIDAFLYNSFVVGLCKARQTSYAIDLLAHMIDKGCKPTEDTYTILIRGIACEGLAEEALELFNELCSRGFVKKSSAEKALVNI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00372 485 SUPERFAMILY HCP-like 167 367 - -
Tsu07g00372 485 Gene3D Tetratricopeptide repeat domain 66 210 IPR011990 GO:0005515
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 408 441 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 197 231 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 165 190 IPR002885 -
Tsu07g00372 485 TIGRFAM PPR: pentatricopeptide repeat domain 443 473 IPR002885 -
Tsu07g00372 485 Gene3D Tetratricopeptide repeat domain 211 328 IPR011990 GO:0005515
Tsu07g00372 485 PANTHER ATPASE EXPRESSION PROTEIN 3 202 483 - -
Tsu07g00372 485 PANTHER ATPASE EXPRESSION PROTEIN 3 37 208 - -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 193 IPR002885 -
Tsu07g00372 485 Gene3D Tetratricopeptide repeat domain 401 469 IPR011990 GO:0005515
Tsu07g00372 485 Gene3D Tetratricopeptide repeat domain 329 400 IPR011990 GO:0005515
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Tsu07g00372 485 PANTHER OS02G0565400 PROTEIN 37 208 - -
Tsu07g00372 485 PANTHER OS02G0565400 PROTEIN 202 483 - -
Tsu07g00372 485 Pfam PPR repeat family 299 348 IPR002885 -
Tsu07g00372 485 Pfam PPR repeat family 405 451 IPR002885 -
Tsu07g00372 485 Pfam PPR repeat family 194 243 IPR002885 -
Tsu07g00372 485 Pfam PPR repeat 161 190 IPR002885 -
Tsu07g00372 485 Pfam PPR repeat 365 396 IPR002885 -
Tsu07g00372 485 Pfam PPR repeat 261 292 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Tsu07g00372 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00372 Tsu-Chr7 2787180 2788637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00372 226 484 Glycosyltransferase AT1G05670 30.502 1.07e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00372 - - gmx:100791459 491.5