Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00371 ATGGATACGGTTATACACTTTCACTCATTTCACTATCACTATCACAAACTTGATTctataacaacaataaaacCTTTCATTCTATCTCCTCATAATCTTAGTAAACTCAAATGCACAACTTCTAGTATAAACTATATCCCCAACGGTAAATCACAACAAAACCCTAAACGGAATTCCAATAGTAAACAATCATCCCTAAACAATAATCATCTTCGTACATTGATTAAATTTGGTGAATTAGATGAGGGGTTTAAGTTTCTTGAGCGCATGAGTTTCAAAGGAGGCATTCCCGATCTATTTGTTTGCACAAACCTCATTCGTCAGTTTTGCAAAACCGGTAAAACTAACAAAGCTACACGTGTCATGGAAATTCTAGAAGCTTCCGGTGTGGTTCCTGATGTTGTAGCCTACAGTGTTTTGATTGATGGTTATTGCAAATCGGGGGAGATAGAGAAAGCTTTGCAGCTTCTACAACAGATGAGTGTTTCGCCCGATGTGGTCACTTATAATACGATTTTGCGTGGTTTGTGTGATAGTGGTAAATTCGAGCAAGCTATGGAAGTTCTTGATATGCAACTACAAAGGGAGTGTTATCCCGATGTGATTACGTACAATATATTGATAGAGGCGTCTTGTAAAGAGAGTGGAGTTGGTGAGGCAATGAAATTATTGGATGCGATGAAGATTAAAGGATGTAAACCCGATGTGGTTACATACAATGTTCTGATCAATCGGATTTGCAAGGAAGGTAGGTTGGATGAAGCAATTAAGTTATCGAGTGATATGTCATCTCATGGGTGTAAACCCGATGTGGTTACGTACAATATATTGATAGAGGCGATTTGTAAGGAGAGTGGAGTTGGCAAGGCGATGGAATTATTGAATAAGATGAAGATTAAAGGATGTAAACCCGATGTGGTTACTTTCAATGTTCTTATCAATGCGATTTGTAAGGAAGGTAGATTGGATGAAGCAATTAAGTTATTGAGTGACATGGTATCTTATGGTTGTAAACCCGATGTAATTACATACTCTTCACTGATTCAGGGATTTATTCGTGGGAGAAAGGTTGAGGGTGCTATCAAAATTTTCCATGACTCGGAAAGATCAGGCATTAGGATCAATGCTATCACTTACAATTCAATCATGTTGGGACTCTGTATTGCTTATGAAGGATTAGCTGAGGAGGCCCTGGAGTTGTTCAATGAGTTGCGCTACAAAGGATTTTTGAAGAACAGGTCTGCAGAAAAGAATCTCAATCTTGATCATGTGAATACCAATGGAACGTACAAATTTCGACTAGCTCTAGCATCTGTACATTTCGCTGAGTTACAGAGTCGCATAAACAACTCAAATGCAACAAGTCCGCCTTTATTTTCAAGTGGAGTTATTGGAGAGGAGAATACTATAGTGAGACATGGAATTCATGGATTGTACAACATTGATGTACAAGACACTCTTGTTTTGAtcggaaaaaaagaagaaggcaCTCTTCTTATGAACGGGAACAATACCATATTTTAA 1524 0.372 MDTVIHFHSFHYHYHKLDSITTIKPFILSPHNLSKLKCTTSSINYIPNGKSQQNPKRNSNSKQSSLNNNHLRTLIKFGELDEGFKFLERMSFKGGIPDLFVCTNLIRQFCKTGKTNKATRVMEILEASGVVPDVVAYSVLIDGYCKSGEIEKALQLLQQMSVSPDVVTYNTILRGLCDSGKFEQAMEVLDMQLQRECYPDVITYNILIEASCKESGVGEAMKLLDAMKIKGCKPDVVTYNVLINRICKEGRLDEAIKLSSDMSSHGCKPDVVTYNILIEAICKESGVGKAMELLNKMKIKGCKPDVVTFNVLINAICKEGRLDEAIKLLSDMVSYGCKPDVITYSSLIQGFIRGRKVEGAIKIFHDSERSGIRINAITYNSIMLGLCIAYEGLAEEALELFNELRYKGFLKNRSAEKNLNLDHVNTNGTYKFRLALASVHFAELQSRINNSNATSPPLFSSGVIGEENTIVRHGIHGLYNIDVQDTLVLIGKKEEGTLLMNGNNTIF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Tsu07g00371 507 PANTHER ATPASE EXPRESSION PROTEIN 3 325 387 - -
Tsu07g00371 507 PANTHER ATPASE EXPRESSION PROTEIN 3 45 276 - -
Tsu07g00371 507 PANTHER ATPASE EXPRESSION PROTEIN 3 266 342 - -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 411 IPR002885 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Tsu07g00371 507 Pfam PPR repeat 129 161 IPR002885 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Tsu07g00371 507 Pfam PPR repeat 377 409 IPR002885 -
Tsu07g00371 507 Pfam Polysaccharide lyase family 4, domain III 418 506 IPR029411 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 163 IPR002885 -
Tsu07g00371 507 PANTHER OS02G0565400 PROTEIN 45 276 - -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Tsu07g00371 507 Pfam PPR repeat family 234 283 IPR002885 -
Tsu07g00371 507 Pfam PPR repeat family 164 213 IPR002885 -
Tsu07g00371 507 Pfam PPR repeat family 304 352 IPR002885 -
Tsu07g00371 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Tsu07g00371 507 Gene3D Tetratricopeptide repeat domain 52 193 IPR011990 GO:0005515
Tsu07g00371 507 Gene3D Tetratricopeptide repeat domain 335 407 IPR011990 GO:0005515
Tsu07g00371 507 Gene3D Tetratricopeptide repeat domain 194 263 IPR011990 GO:0005515
Tsu07g00371 507 Gene3D Tetratricopeptide repeat domain 264 334 IPR011990 GO:0005515
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 307 341 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 167 201 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Tsu07g00371 507 TIGRFAM PPR: pentatricopeptide repeat domain 135 161 IPR002885 -
Tsu07g00371 507 PANTHER OS02G0565400 PROTEIN 325 387 - -
Tsu07g00371 507 PANTHER OS02G0565400 PROTEIN 266 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00371 Tsu-Chr7 2781826 2784949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00371 76 419 Glycosyltransferase AT1G05670 30.836 1.07e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00371 - - gmx:100790449 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00371 07 2781826 2784949 Tsu07g00371 07 2781826 2784949 ECH