LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g00322	atggATTCAGCAATAGCTTCAACTTATGCATCATCTCTCACTACAAATCTAACCAAAATTACCACTGAACGAGTTACAAGAATCAGAAACACTGTTTTCTTAGGTGAAACTACTAAGGGAAGTTTAAGCTCAAAATTTCTCACTATTCAATCACCCAAAACTCACATCAATCTTAGAAAGAATGGAACTTTACACGCTATTCTCACACCGGAGATCAAtgattatgaaaagtccacgACTTTTCAAGAGGGACCCTATTTTGAGACTCCAAAAGCAGACCCAAAAAGTGTTGCTTCAATCATTTTGGGTGGTGGTGCTGGAACCCGTCTTTTTCCTCTTACTAGCAAAAGAGCCAAACCTGcgGTTCCAATTGGAGGGTGTTACAGACTCATTGATGTTCCTATGAGCAATTGCATCAACAGTGGCATTAGAAAAATATTCATCTTAACACAGTacaattctttttctcttaatcGACACCTGTCTCGCGCCTACAATTTTGGAAATGTCTCCACTTTTGGGGAGGGTTTTGTGGAGGTATTGGCTGCAACTCAAACATCTGGAGAAGCTGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCTAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGAACTATATGGATTTTGTACAGAAACATATCGACACAAATGCTGATATCACAGTTTCCTGTCTTCCCATGGACGACAGTCGAGCATCAGATTATGGGTTGATGAAAATTGACGGAACGGGACGGATTATACAGTTTGCGGAAAAGCCCAAGGGATCAGATTTAAAAGCAATGCGTGTTGATACCACGGTTCTTGGGTTATCTCCAGAAGAAGCAAAGGAACATCCTTATATTGCGTCCATGGGTGTCTACGTGTTTAGAACTGAGACCCTACTGGAACTGTTAAGATTGAACGGTTCTTCATGCAACGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGCGGGCACAATGTCCAGGCATTTTTGTTCAATGACTACTGGGAAGATATTGGAACCATAAAGTCCTTCTTTGATGCAAATTTGGCCCTAACAGAAAATCCTCCAAAATTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCGAGATTCTTACCACCCACCAAAGTAGAAAAATGCAAGATTGTGGATGCGATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGTGTTCAGCATTCCATTGTTGGAATACGATCACGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGACTGAAATTGCATCTCTGCTGGCAGAAGGAAATGTCCCAGTTGGTGTTGgagaaaataccaaaataagGAACTGTATAATCGACAAGAATGCAAAAATTGGAAGAAATGTGATCATTACAAATGCTGATGGTGTTGATGAAGCAGACAAAACTAAGGAAGGATTTTACATTAGGTCTGGCATCACCGTTATACTGAAGAATGCAACAATTAAAGACGGAACAGTTATATGA	1593	0.3905	MDSAIASTYASSLTTNLTKITTERVTRIRNTVFLGETTKGSLSSKFLTIQSPKTHINLRKNGTLHAILTPEINDYEKSTTFQEGPYFETPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTFGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGSDLKAMRVDTTVLGLSPEEAKEHPYIASMGVYVFRTETLLELLRLNGSSCNDFGSEIIPSAVSGHNVQAFLFNDYWEDIGTIKSFFDANLALTENPPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTETEIASLLAEGNVPVGVGENTKIRNCIIDKNAKIGRNVIITNADGVDEADKTKEGFYIRSGITVILKNATIKDGTVI	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g00322	530	CDD	LbH_G1P_AT_C	398	524	-	-
	Tsu07g00322	530	CDD	ADP_Glucose_PP	100	361	-	-
	Tsu07g00322	530	Gene3D	Hexapeptide repeat proteins	396	530	-	-
	Tsu07g00322	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	194	202	IPR005836	GO:0005978\|GO:0008878
	Tsu07g00322	530	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	97	491	IPR029044	-
	Tsu07g00322	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	103	122	IPR005836	GO:0005978\|GO:0008878
	Tsu07g00322	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	309	319	IPR005836	GO:0005978\|GO:0008878
	Tsu07g00322	530	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC	10	530	-	-
	Tsu07g00322	530	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	86	395	IPR029044	-
	Tsu07g00322	530	Pfam	Nucleotidyl transferase	99	376	IPR005835	GO:0009058\|GO:0016779
	Tsu07g00322	530	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	10	530	IPR011831	GO:0005978\|GO:0008878
	Tsu07g00322	530	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	98	495	IPR011831	GO:0005978\|GO:0008878
	Tsu07g00322	530	SUPERFAMILY	Trimeric LpxA-like enzymes	392	530	IPR011004	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g00322	Tsu-Chr7	2483864	2487553	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g00322	K00975		-	gmx:100793757	859.366

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g00322	07	2483864	2487553	Tsu07g00322	07	2483864	2487553	ECH