Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00317 ATGTCTGAACTCATTTGCAAtgatgaaagaagagagaattcAGAGGATGATAAGTGGAAAAAAATTGGCAGTCTTAAAAAGAAAGCAATAAATGCATCAACTAAATTAAGGCGTTCTCTTACAAAGAAAAGAAGTAGCAAAAGTGGTGGCAGTAGAAGCAATTCCCTCTCTATTGAGGATGTTAGACAAGTTGAGGAGCTTCATGCAGTGGATGCATTTCGACAAGCACTTATATTAGATAATTTGCTTCCTCCAATACATGATGACTACCATATGCAATTGAGATTCTTGAAAGCAAGGAAGTTTGATGTTGAGAAAGCAAAGCTCATGTGGGTCAACATGATCCAATGGAGGAAAGATTATGGTACAGATACAATTATAGAGGATTTTGATTACAAGGAGTTGCAAGAAGTTCAGAAGTATTATCCACATGGTTATCATGGTGTGGATAAGGAGGGAAGACCTGTTTATATTGAGAGACTAGGGAAAGTTGATGCTAATAGGCTTATGCAAGTAACTACCATGGAAAGATATTTGAAATACCATGTACAAAGTTTTGAGAAAACATTTTCTATCAAGTTTCCAGCTTGCTCTATAGCTGCTAAGAGACACATAGATTCAAATACAACAATTTTGGATGTTCAAGGCGTGGGtttcaaaaatttcaccaaGTCTGCACGAGAACTCATCATCCAGCTGCAGAAGATTGATAGTGATTACTATCCTGAAACACTTTGTCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTCTGGAACACAGTGAAAACATTTATTGATCCCAAAACTACTTCAAAGATTCATGTTCTTGGAAACAAGTTCCAAAGTAAATTACTCGAGATTATCGATGCGAGTGAGCTGCCAGAGTTTCTAGGTGGTAGTTGCACTTGTGTAGATCATGGTGGCTGTATGATATCTGATAAAGGACCATGGCAAGACCCAAACattttaaagATGGTTCTTAGTGGTAAAGTGCAATGTTCTAAACAAATAGTGACAGTTTCCAATGACAAGGGGAGGGTGATTGAATGTGATAAAACATCTATTCCAACGATACGAAGTGGCTATACATCCACTGGAGAATCAGGATCTGAAGCTGAAGATATCACCTCTCCCAAAGCATGTGGGAATTCTATGAACCCTATATTAACTCCTGTCCGAGAAGAGACAAGATTTCCTGATAAGGTTGGTCCTAGTTGCGGTTTTCCTGGGAATGATGAGTGTGTTCCCTTGGTTGACAAGACTATAGATGTTGGATCAATGGAGAAGCAAGCAGCAGCACCAAACTCATTTAGGTCAAAAGAAAATTTGCTTATGGCAACCAGGACTGTTACAGTGGCCTTCGTGTTtgctttttttgcttttgttcgTTCAATAGCATTTCGTGTAACAAAGGGAGTAGAAAGGGAGGAACTTGCTACCAGATTCACAACGACAAactcatcttcatcttctaccttAACTCGCCTCAGTGAACTTGAAAAAAAAGTTGAGACACTACAGAATAAACTTAATGTGATGCCACGTGAGAAAGAGGAGCTGCTAAATGCTGCAGTTTGTCGTGTGGATGCATTGGAAGCAGAGCTCATTGCTACAAAAAAGGCTTTGTACGAGGCTTTAATGAGACAAGAAGAACTTTTGGCATATGTAGACtatcaagaaaaaagaaaattcaagTGCTGCTGGTAA 1716 0.3677 MSELICNDERRENSEDDKWKKIGSLKKKAINASTKLRRSLTKKRSSKSGGSRSNSLSIEDVRQVEELHAVDAFRQALILDNLLPPIHDDYHMQLRFLKARKFDVEKAKLMWVNMIQWRKDYGTDTIIEDFDYKELQEVQKYYPHGYHGVDKEGRPVYIERLGKVDANRLMQVTTMERYLKYHVQSFEKTFSIKFPACSIAAKRHIDSNTTILDVQGVGFKNFTKSARELIIQLQKIDSDYYPETLCQMFIINAGPGFKLLWNTVKTFIDPKTTSKIHVLGNKFQSKLLEIIDASELPEFLGGSCTCVDHGGCMISDKGPWQDPNILKMVLSGKVQCSKQIVTVSNDKGRVIECDKTSIPTIRSGYTSTGESGSEAEDITSPKACGNSMNPILTPVREETRFPDKVGPSCGFPGNDECVPLVDKTIDVGSMEKQAAAPNSFRSKENLLMATRTVTVAFVFAFFAFVRSIAFRVTKGVEREELATRFTTTNSSSSSTLTRLSELEKKVETLQNKLNVMPREKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYVDYQEKRKFKCCW 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00317 571 Gene3D - 122 332 IPR036865 -
Tsu07g00317 571 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 8 567 - -
Tsu07g00317 571 SMART sec14_4 134 305 IPR001251 -
Tsu07g00317 571 Pfam CRAL/TRIO domain 140 302 IPR001251 -
Tsu07g00317 571 Coils Coil 492 519 - -
Tsu07g00317 571 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 134 308 IPR001251 -
Tsu07g00317 571 MobiDBLite consensus disorder prediction 33 55 - -
Tsu07g00317 571 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 8 567 - -
Tsu07g00317 571 SUPERFAMILY CRAL/TRIO domain 133 328 IPR036865 -
Tsu07g00317 571 SUPERFAMILY CRAL/TRIO N-terminal domain 65 130 IPR036273 -
Tsu07g00317 571 CDD SEC14 135 302 IPR001251 -
Tsu07g00317 571 SMART CRAL_TRIO_N_2 89 114 IPR011074 -
Tsu07g00317 571 Pfam CRAL/TRIO, N-terminal domain 93 113 IPR011074 -
Tsu07g00317 571 Gene3D - 23 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00317 Tsu-Chr7 2454537 2458304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00317 69 299 Acyl Lipid Metabolism Gene Families AT5G47730 28.163 7.72e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00317 - - gmx:100811161 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00317 07 2454537 2458304 Tsu07g00317 07 2454537 2458304 ECH