Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00313 ATGATCTCTCAGTTCTTCGTTCTTTCTCAAAGAGGCGACAACATCGTCTTCCGCGactATCGCGGTGAAGTACAAAAAGGAAGCCCTGAGACATTTTTCAGAAAAGTGAAGTTCTGGAAAGAGGATGCTGATGGAGATGCTCCACCTGTTTTTAATGTAGATGGTGTTAACTACTTCCATGTGAAGGTTGCTGGATTGTTATTTGTTGCTACAACTAGAATCAATGTTTCCCCTTCACTTGTTTTGGAACTTTTACAAAGAACTGCACGTGTCATTAAAGATTACCTTGGTGTTCTTAATGAAGATTCTTTTCGAAAGAATTTCGTGCTCGTTTATGAACTTCTTGATGAAGTCATTGATTTCGGTTATGCGCAAACAACATCTACTGAGGTTTTGAAGTCATATGTTTTCAATGAGCCAATTGTGATTGAGTCTGCACAGCTTGGCCCTGCTTCAATTTTTATGCAAGGAACGAAACGAATGCCAGGTACAGCTATTACAAAATCTGTTGTTGCTAATGAACCTGGTGGTAGGAAGAGGGAGGAGATCTTTGTTGATGTGATTGAGAAAATAAGTGTCACATTCAATTCCAGTGGATATATACTTACTAGTGAGATTGATGGTACCATTCAAATGAAGAGTTATCTTACCGGTAACCCAGAGATTCGAGTTGCTCTCAATGAGGACTTGAGTATAGGAACAAGTGATTACAGAGGTTCTGGTGCTGTGATATTAGATGATTGTAACTTCCACGAGTCTGTACACCTTGATAGTTTCGATATTGATCGAACTTTATCTTTGGTACCACCGGATGGTGAATTTCCTGTTATGAATTATCGTATAACTCAAGCATTTAAGCCACCCTTCCGTATTAATGCATTGATTGAAGAAACAGGACCACTCAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGCATCAATGCTAATACTGTTCTCGTACAGATGCCACTTCCTACATTTACAGCACGTGTTAATTTTGAGTTAGAACCTGGAGTGGTTGGACACACAACTGATTTTAAGGAAGCAAACAAAAGACTGGAATGGGGACTAAAAAAGGTTGTTGGTGGATCTGAGCATACTTTACGTGCAAAGCTGACGTTTTCACAGGAGTTGCATGGAAATATCATGAAAGAAGCAGGACCTCTTAGCATGACATTCACTATACCTATGTACAATTCTTCAAGGCTTCAGGTGAAGTACTTGCAAATTGCAAAGAAGTCCAAGACTCATAATCCTTATCGATGGGTTAGATATGTAACCCAAGCAAACTCATATGTTGCCCGGTTGTAA 1323 0.3953 MISQFFVLSQRGDNIVFRDYRGEVQKGSPETFFRKVKFWKEDADGDAPPVFNVDGVNYFHVKVAGLLFVATTRINVSPSLVLELLQRTARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYAQTTSTEVLKSYVFNEPIVIESAQLGPASIFMQGTKRMPGTAITKSVVANEPGGRKREEIFVDVIEKISVTFNSSGYILTSEIDGTIQMKSYLTGNPEIRVALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDIDRTLSLVPPDGEFPVMNYRITQAFKPPFRINALIEETGPLKAEVTIKVRAEFNSSINANTVLVQMPLPTFTARVNFELEPGVVGHTTDFKEANKRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPLSMTFTIPMYNSSRLQVKYLQIAKKSKTHNPYRWVRYVTQANSYVARL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00313 440 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 179 439 IPR036168 -
Tsu07g00313 440 CDD AP4_Mu_N 3 143 - -
Tsu07g00313 440 Gene3D Mu homology domain, subdomain B 287 439 - -
Tsu07g00313 440 PIRSF AP_complex_mu 1 440 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PRINTS Clathrin coat assembly protein signature 245 272 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PRINTS Clathrin coat assembly protein signature 358 369 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PRINTS Clathrin coat assembly protein signature 171 199 IPR001392 GO:0006886|GO:0016192|GO:0030131
Tsu07g00313 440 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 440 - -
Tsu07g00313 440 Pfam Adaptor complexes medium subunit family 179 439 IPR028565 -
Tsu07g00313 440 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Tsu07g00313 440 Gene3D - 1 141 - -
Tsu07g00313 440 ProSiteProfiles Mu homology domain (MHD) profile. 180 439 IPR028565 -
Tsu07g00313 440 Gene3D Mu homology domain, subdomain B 179 435 - -
Tsu07g00313 440 CDD AP-4_Mu4_Cterm 175 440 - -
Tsu07g00313 440 PANTHER AP COMPLEX SUBUNIT MU 2 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00313 Tsu-Chr7 2397954 2402520 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00313 K12402 - gmx:100800985 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00313 07 2397954 2402520 Tsu07g00313 07 2397954 2402520 ECH