Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00311 ATGGGATCGGTTTGTTGTGTTGCTGCAAAGGATCAAACTATTCCCAATAGAACCGGAAGTGAAAGTTTTCACAGAAACCATGTATGTTCACCATCATTGAGTTTTCAATGGGATAGGTGGAGCCGTGTCGCTAGTGAAATTGATGATCTTTCATTTCGCACGCCTCACAGAGTCAGCAGAAGTGTCAGCATGGAGTTAAAAGGGTCATTAAGTTCTGACAGAGGCAATTTATCAGATGTGGGAAGCACCATGGAGAATTCTCTAACACCCATGTCTCAGAAGTCCCCTATTCATGAGCAATTAGGTGCAAGCCGGATAAATCTATCTTCAGATCTATCCATGTCAAGTAATTGTTCTACAGCGGTGAAGAATCCGACAGAATCACCAGATATCGCAGAATCTTCAATACCAAATATTTCTTTCTCGATACCTTCTTCTTTCTCTACACCTATAAGTCGTAATCTTAATCATCACAATCTTCCTAGTTCAACACCATCTAGATGGGCTCATCGATCTCCAGGACACCCACTGTTGAGACAAATTTCTGATAGTCGAATCCTGAGTCTGAAATCACCTGACAACTCAATTTCTGAGGGAAGGCCATCATTTGTACTGTCTACTTGCAGCAATGAAATGATAACTGGATCCCAATGTGGGTCATCTGATGGCTGGTCTATGCGCACCTTTTCCGAACTGGTGGCCTCATCTCAAAAGGAAAGGTGGTCATTTGATAGCGAGCATTTTGGTTCAGGTCGACACAAGATAAGTGGAACTAGTAGTAGGTTCTCATATTCTCCCTCCATGGATTTACAATCTTGTGGGGCCTGTGCCAAGCTATTGACTGAGAAAACTGCATGGAGCAGCCAGAAATTCATTTCCAACAACGACCTCTCGGTTGTTGCTGTATTGGTCTGTGGTCATGCGTATCATGCGGAATGCTTGGAGACCATGACATCCGAAGCAGATAGTTATGATCCAGCATGTCCTATTTGCATGGTTGGAGAGAAGCACTTGTCAATGTTATCCAGAAAAGGTCTTAGGGCAGAATCAGAAATGAAGGCCAAGAACTACAAGATATCCCGAAACCGTGTAGTTGATAGCTACTTTGATGGTGGATTAGATGTTTATGATCGTCAAAAAAACATAGTTTCGAAATTGGAGCCTAGCTCCAGTTCAAGGAGTTCATTAAGAAAACCCTTCTTGAAGCGGCATTTTTCACTGGGATCAAAGTGGAACCGATCCCTGTCTGAGAATGATTCTGCCAGGAAGAAGGGTTTTTGGGCGAGATATCGGAAAGATTGA 1302 0.4301 MGSVCCVAAKDQTIPNRTGSESFHRNHVCSPSLSFQWDRWSRVASEIDDLSFRTPHRVSRSVSMELKGSLSSDRGNLSDVGSTMENSLTPMSQKSPIHEQLGASRINLSSDLSMSSNCSTAVKNPTESPDIAESSIPNISFSIPSSFSTPISRNLNHHNLPSSTPSRWAHRSPGHPLLRQISDSRILSLKSPDNSISEGRPSFVLSTCSNEMITGSQCGSSDGWSMRTFSELVASSQKERWSFDSEHFGSGRHKISGTSSRFSYSPSMDLQSCGACAKLLTEKTAWSSQKFISNNDLSVVAVLVCGHAYHAECLETMTSEADSYDPACPICMVGEKHLSMLSRKGLRAESEMKAKNYKISRNRVVDSYFDGGLDVYDRQKNIVSKLEPSSSSRSSLRKPFLKRHFSLGSKWNRSLSENDSARKKGFWARYRKD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00311 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 333 IPR013083 -
Tsu07g00311 433 MobiDBLite consensus disorder prediction 115 135 - -
Tsu07g00311 433 SMART ring_2 273 331 IPR001841 -
Tsu07g00311 433 SUPERFAMILY RING/U-box 268 332 - -
Tsu07g00311 433 MobiDBLite consensus disorder prediction 154 169 - -
Tsu07g00311 433 MobiDBLite consensus disorder prediction 65 97 - -
Tsu07g00311 433 MobiDBLite consensus disorder prediction 154 173 - -
Tsu07g00311 433 ProSiteProfiles Zinc finger RING-type profile. 273 331 IPR001841 -
Tsu07g00311 433 PANTHER EXPRESSED PROTEIN 1 427 - -
Tsu07g00311 433 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00311 Tsu-Chr7 2388593 2391913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00311 - - gmx:100793040 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00311 07 2388593 2391913 Tsu07g00311 07 2388593 2391913 ECH