Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00306 ATGTTGCTTCGGCGATTGCCATGGATGGCGGTTTCCGCTGCCAAACCACTTTCATTGCATTCATTCATCGGAGTTTTCACTCCCATTCCAAACCAACTCACTTTCTCCCCTTTATCCTTCTGCTCCACTTCCGAACTCAATCTCACTCACCATCCAGATAAACCTCAGGAACACGAAACGGAAAATCGTCGCCCGCAGCATCTGAAACCCGGTCTTTATCTCGTAGGAACACCAATTGGAAATCTTGAAGACATCACCTTCAGGGCTCTCCGTGTATTGAACTCCGCAGATGTTATACTATCGGAAGACACGAGGCACTCTGGGAAATTGCTTCATCATTTCAATATCAAAACACCTCTTATGAGTTATCACAAGTTCAATGAATCACAAAGGGAACAGCTTGTGCTCAGGAGGTTGAAACAAGGTGAAATTGTGGCACTTATAAGTGACGCTGGAACTCCGGGTATCAGTGATCCTGGTATGGAGTTGGCCAAATTATGTGTTAGTGAAAATGTTCCTGTCGTTCCAATCCCTGGGCCATGTGCGTTGGTATCTGCTCTTTCTGCCTCGGGTTTATCCACCGATGAATTTACATTTGTTGGTTTTCTTCCAAAACATTCGGGATCAAGAAAGAAAAGGCTCATGGCTTCGGCGGAGCAAACAGCAACACAAATATTTTATGTTCCTCCTCACAAGCTTTCTCAGTTTCTTGAAGAGGGTTCGTCAATTTTTGGTGATACAAGGAGATGCGTCATTGCTCGAGAAATGACCAAGTTTCACGAAGAGTTTTGGCGCGGTACTCTCGATGAAGCCAACAAAGTATTTTCTATTCGTCAGCCAAAGGGAGAACTTACTATATTGATTGAAGGGCAAGCACATCCTAAAGTTGAACCTCCGTCCGACATCAAGCTTGAGAATGAACTAAGAGAATTAATTGAAAACGGCGAGAGTCTTTCCACGGCTGTCAAATTGGTTGCTGAAAGAACTTCAGCAAGTAGAAAAACTATATATTCACTCGCGAATTGCTTACCACTTGTTGTTGAACAACTGCTGATCATGTATGGTTGGGTTGGTGTACCAGCATTTCACATTGTTGCCTTGGCTTCCCATGGTTTAGATCTTGAAGGCACAATTGATGTTCTTTCCCCAACACTTGAGCAAGAGAGTCAGTCATTTGGTGACATTGCCACTAGAGTAGTTCCTTGA 1206 0.4386 MLLRRLPWMAVSAAKPLSLHSFIGVFTPIPNQLTFSPLSFCSTSELNLTHHPDKPQEHETENRRPQHLKPGLYLVGTPIGNLEDITFRALRVLNSADVILSEDTRHSGKLLHHFNIKTPLMSYHKFNESQREQLVLRRLKQGEIVALISDAGTPGISDPGMELAKLCVSENVPVVPIPGPCALVSALSASGLSTDEFTFVGFLPKHSGSRKKRLMASAEQTATQIFYVPPHKLSQFLEEGSSIFGDTRRCVIAREMTKFHEEFWRGTLDEANKVFSIRQPKGELTILIEGQAHPKVEPPSDIKLENELRELIENGESLSTAVKLVAERTSASRKTIYSLANCLPLVVEQLLIMYGWVGVPAFHIVALASHGLDLEGTIDVLSPTLEQESQSFGDIATRVVP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00306 401 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 71 290 IPR008189 GO:0008168
Tsu07g00306 401 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 72 340 IPR008189 GO:0008168
Tsu07g00306 401 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 149 160 IPR018063 GO:0008168
Tsu07g00306 401 Gene3D - 179 295 IPR014776 GO:0008168
Tsu07g00306 401 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 340 IPR008189 GO:0008168
Tsu07g00306 401 CDD RsmI 73 289 IPR008189 GO:0008168
Tsu07g00306 401 SUPERFAMILY Tetrapyrrole methylase 70 288 IPR035996 GO:0008168
Tsu07g00306 401 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 72 271 IPR000878 GO:0008168
Tsu07g00306 401 Gene3D - 56 178 IPR014777 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00306 K07056 - gmx:100819709 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00306 07 2357033 2361023 Tsu07g00306 07 2357033 2361023 ECH