Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00278 ATGTCTGCATCCGAAGCTGAGAAGAAGGTTGAGCAAGAAAACCAAGTTCCCAAAGGTGGCGAACTCTTGTTCTGTGGTGCCACGTGTTGGGATATCGTTGGTCGTCGCAAAGGTCCCGCTGAGGGTAACTTGGTTTCTCCTTCTCGCCTCCGTCCTCTCGTCGGCATTGATATTCGTTACGTTGCCTCCGGTTGCGCGTCTTGTCATTGCGTAGCATTGGACGTCGAAGGGCGTTGCTATACATGGGGACGTAATGAGAAAGGGCAATTGGGTCATGGAGATACCATTCAGCGTGATAGGCCGACTGTGGTGTCTGAACTATCAAAATACAAAATTGTTCAAGCTGGAGCTGGGAGGAGTCATACAGTAGTTGTTACAGATGATGGAAATTCGCTAGCATTCGGATGGAACAAACATGGACAGCTAGGTTTCGGTTCTGCAAAAACTGAAATTGAACCATCTCCTATTCGCTGTGTCGTGTCTGAAGTTAAATATGCTACATGTGGTGGTGACTTTACTGTGTGGTTATCCTCAGTAGACGGAGCTTCTATACAGACTGCTGGTCTTCCACAATATGGACAACTCGGGCATGGAACAGATAACGAGTATAATTCCAAAGACAGTTCTGTGAAATTAGTTTATGAAGCACAGCCACGTCCTCGAGCAATAGCTTCCCTTGCTGGCGAAACCATTGTCAAGGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTATGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAATTTGCTCCTCGCCGTGTTGACGTTTTCACAAATAGAAATGTTTTGCCTCCTGATGCAATTATCTCAGCTGGTTCTATGAACTCTGCATGTACAGCAGcTGGAGGGCAATTGTACATGTGGGGCAAAATAAAGAACACCGGTGATGACTGGATGTACCCTAAGCCTTTAATGGATTTAAGCGGTTGGAATATACGATGCATGGATTCAGGGGGTATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTTGGATACGGACCTACTGGACAGAAGTCTTCAGCTGTACCAAAAAAGGTGGATATACTTGAGGGTATGCGTGTATTGAGTGTTGCTTGTGGTTTGGGTCATTCAATGGTTGTCGTTGACAGAGCAAATGTTGCTGATAGACTTGACCAGCTTGATACACATGATGGCAAAGCTGCTGGTGAAGGTAATGAGCCAGTGAACAAAACTTCAGTGCCTAAGAAGGCTGCTGCAAAAAAGGGTGCAAAGAAAGCTGACAGCtcaaagaagaggaaaaaagcAAAAGATTCATCTGACTCCGAAGAAGACCAAGAAGAGGCTGAAGAAAGTGACAACAGTGATGATGAAGTTAACGGTGAGGCTGATGTTAAAACATCACGCGGTGGAAAAAATTCTGGCCGAGGGCGCGGTCGTGGTCGCGCTCCTGCAAATAAAAGCAGTTCTAAATCTTCTCCAGTGAAGCCAACCGGTAAGAGAGGAAGACCCAGAAAGTCATGA 1578 0.4607 MSASEAEKKVEQENQVPKGGELLFCGATCWDIVGRRKGPAEGNLVSPSRLRPLVGIDIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVQAGAGRSHTVVVTDDGNSLAFGWNKHGQLGFGSAKTEIEPSPIRCVVSEVKYATCGGDFTVWLSSVDGASIQTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFAPRRVDVFTNRNVLPPDAIISAGSMNSACTAAGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDILEGMRVLSVACGLGHSMVVVDRANVADRLDQLDTHDGKAAGEGNEPVNKTSVPKKAAAKKGAKKADSSKKRKKAKDSSDSEEDQEEAEESDNSDDEVNGEADVKTSRGGKNSGRGRGRGRAPANKSSSKSSPVKPTGKRGRPRKS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00278 525 Gene3D - 210 419 IPR009091 -
Tsu07g00278 525 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Tsu07g00278 525 Gene3D - 3 209 IPR009091 -
Tsu07g00278 525 SUPERFAMILY RCC1/BLIP-II 17 402 IPR009091 -
Tsu07g00278 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Tsu07g00278 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Tsu07g00278 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Tsu07g00278 525 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Tsu07g00278 525 MobiDBLite consensus disorder prediction 414 525 - -
Tsu07g00278 525 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Tsu07g00278 525 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Tsu07g00278 525 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Tsu07g00278 525 Pfam Regulator of chromosome condensation (RCC1) repeat 188 244 IPR000408 -
Tsu07g00278 525 Pfam Regulator of chromosome condensation (RCC1) repeat 247 299 IPR000408 -
Tsu07g00278 525 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Tsu07g00278 525 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Tsu07g00278 525 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Tsu07g00278 525 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Tsu07g00278 525 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Tsu07g00278 525 PANTHER PROTEIN RCC2 4 524 IPR028641 -
Tsu07g00278 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Tsu07g00278 525 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Tsu07g00278 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Tsu07g00278 525 MobiDBLite consensus disorder prediction 461 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00278 Tsu-Chr7 2132393 2138554 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00278 - - gmx:100819842 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00278 07 2132393 2138554 Tsu07g00278 07 2132393 2138554 ECH