Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00235 ATGAGGATGGACATGAAGAAGGATATTGGAGCTATTAATCAAGATGTCATGGTGAATAATAATGGTAACTTTGTGgaacaagaagatgaagaagctGGCTTAAGCTTTAAATTTTCACATCTTCTTGCTTCTAAGGATCGTGATTTTCTTCTATCACCATCTGGGGCTCAGGTGAAAGTTTCAGAACTTGAAGGAAAAATAGTGGGTCTATTATTTGCTGCCAATTGGTACCCACCATGTCGTGGATTCACTCAATTGCTCATTGGTATCTATCAACAACTCAAAAACAATATCCCACAATTTGAAATAGTGTATGTCTCTTCTGATGAAGACTTAGATGCATTTAATGGATTTTACCAAAACATGCCATGGTTAGCAATTCCTTTCTCTGACTTAGAAACAAAGAAAGCATTGAATAGAAAATATGATGTTGAAGGTATTCCATGTTTGGTTATGTTACAACCTAAAGGTGAAGCAACACTTCGTGATGGTGTTGAACTTATTTATCGATATGGTGTTCAAGCTTATCCGTTTAGTAAAGAGAGATTGGAACAATTGCATGAGGCTGAAAGAGAGAAGCTTGAAAATCAAACACTTGCTAATTTACTTGCTAATAATCATAGAGATTATGTTTTGAGTCATACAAGTGGATTACTCACACAGGTACCTGTTGCTTCTTTAGTGGGAAAAACAATTGGACTATACTTCTCAGCTGGATGGTGTGTCCCATGCACCAAATTCACTCCCAAATTGATTTCAGTTTATCTGAAAATCAAGCAAGAGTTAGCTGAAAAACAAGATCATGAAGAAGGTTTTGAAATTGTTCTTGTTTCTAACGACCGCGACCAAGAATCGTTCGACTCTTACTACAACACCATGCCATGGTTAGCATTACCATTTGGTGATCCAGAAATAAAGAACCTTGCAAGACACTTTGATGTACAAGGAATACCTTGTTTGGTAATTATAGGTCCTAATGgtaaaacaataacaatacaTGGAAGAAACTTGATTAATTTGTATCAAGAAAATGCTTATCCTTTCACTGCTACTAAAGTGGAGCAGCTAGAGAAACAACTTGAAGAAGAGGCTAAGGATCTTCCAAATTTAGTGCAACATGAAGGACACCATCATGGACTTAATTTAGTGTCTGATGGAAATGGTGGAGGACCCTTTATTTGTTGTGTTTGTGATGAACAAGGGTCTAATTGGGCTTATCAATGTCTTCAATGTGGCTATGAGTTAGAAGATATCGTCGACGGTGGAACCACCAAATCTGGAAAACTTAGACTCGACAGTTGGATCTCTTCTCGCATCAATGGTATCAGCAGAGCTCGCGTTCAATCAAGTATTAAAGCCGGACTCGTTCATGTCAATGGCCGTGTTATTGATAAGGTTTCTTTTAATGTCAGAGCTGGGGATGAGATCAAGTGCACAATTGCAGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTTTGGATATAGTTTATGAAGATGACCACTTGCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACATCTGGGACACTTGTAAACGGAATTCTTCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGAGGGGGCTCTTTCAGATACAGAAGATTCTGATGATGAACTTAATGGCTTCTCATCCCAGGAAAGTTCTTGTGATGGTTTAGATTCTACATTTTCTATGGCATCAATTCGACCAGGGATTGTGCATAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTTGCTAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACCATCAACAGGGTCTATGTTAGTCTCACTGCTGGGCTACCTACTCCAGTTGCTGGTCGTGTTGAGGTTCCAGTTGGTCGTGATCCTAATAACCGGCTTCGTATGACCGCTGTAGTTGGAGCAGTTAATTCTGTGAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTAGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATTTGGGTGTACCTCTGCTTGGTGATGAGGTATACGGAGGGACGAAAAGCATGGTCTTGTCACTGCTACGGCCACGAACAACTGCGAGTTTGCATAGCGAAATGTTTAAAGTAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTCTGACTCTGGGGTTTCAGCACCCTCATACAGGGGAGCAGGTGGACTTTTCATGCGAACCCCCTGGAGATTTTAATGAGATTTTGAGCCAGCTTCGTAGAATTGGACAAACTTTTCCACCTTGCATTGCTGTTCTGTTCTGTTCTGTTCACACTTCACACTCACCCACCGATGAACGAGATCCATATTTGAGCACGGTATTAGGTAAGATAACAGTTGTTGACTTATTTGACTGTTGTGTAGAGTCACTGACATGTTGTATTAGTTAA 2511 0.4002 MRMDMKKDIGAINQDVMVNNNGNFVEQEDEEAGLSFKFSHLLASKDRDFLLSPSGAQVKVSELEGKIVGLLFAANWYPPCRGFTQLLIGIYQQLKNNIPQFEIVYVSSDEDLDAFNGFYQNMPWLAIPFSDLETKKALNRKYDVEGIPCLVMLQPKGEATLRDGVELIYRYGVQAYPFSKERLEQLHEAEREKLENQTLANLLANNHRDYVLSHTSGLLTQVPVASLVGKTIGLYFSAGWCVPCTKFTPKLISVYLKIKQELAEKQDHEEGFEIVLVSNDRDQESFDSYYNTMPWLALPFGDPEIKNLARHFDVQGIPCLVIIGPNGKTITIHGRNLINLYQENAYPFTATKVEQLEKQLEEEAKDLPNLVQHEGHHHGLNLVSDGNGGGPFICCVCDEQGSNWAYQCLQCGYELEDIVDGGTTKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVIDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEGALSDTEDSDDELNGFSSQESSCDGLDSTFSMASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTINRVYVSLTAGLPTPVAGRVEVPVGRDPNNRLRMTAVVGAVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTASLHSEMFKVVSELDRPCLHALTLGFQHPHTGEQVDFSCEPPGDFNEILSQLRRIGQTFPPCIAVLFCSVHTSHSPTDERDPYLSTVLGKITVVDLFDCCVESLTCCIS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00235 836 CDD PseudoU_synth_RluA_like 504 753 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g00235 836 Gene3D - 423 485 IPR036986 GO:0003723
Tsu07g00235 836 Pfam Thioredoxin-like 65 158 IPR012336 -
Tsu07g00235 836 Pfam Thioredoxin-like 229 328 IPR012336 -
Tsu07g00235 836 ProSitePatterns Rlu family of pseudouridine synthase signature. 584 598 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g00235 836 ProSiteProfiles Thioredoxin domain profile. 188 365 IPR013766 -
Tsu07g00235 836 SMART s4_6 429 494 IPR002942 GO:0003723
Tsu07g00235 836 ProSiteProfiles S4 RNA-binding domain profile. 429 502 - -
Tsu07g00235 836 Pfam S4 domain 430 476 IPR002942 GO:0003723
Tsu07g00235 836 Gene3D Pseudouridine synthase 553 783 - -
Tsu07g00235 836 Gene3D Pseudouridine synthase 496 545 - -
Tsu07g00235 836 SUPERFAMILY Alpha-L RNA-binding motif 428 516 - -
Tsu07g00235 836 CDD TryX_like_TryX_NRX 48 178 IPR045870 GO:0004791
Tsu07g00235 836 CDD S4 430 508 - -
Tsu07g00235 836 Pfam RNA pseudouridylate synthase 503 698 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g00235 836 SUPERFAMILY Cysteine-rich domain 364 414 IPR046349 -
Tsu07g00235 836 Coils Coil 353 373 - -
Tsu07g00235 836 Coils Coil 180 200 - -
Tsu07g00235 836 Gene3D Glutaredoxin 41 180 - -
Tsu07g00235 836 Gene3D Glutaredoxin 211 350 - -
Tsu07g00235 836 SUPERFAMILY Thioredoxin-like 214 332 IPR036249 -
Tsu07g00235 836 SUPERFAMILY Pseudouridine synthase 489 780 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu07g00235 836 PANTHER THIOREDOXIN 26 407 - -
Tsu07g00235 836 SUPERFAMILY Thioredoxin-like 52 159 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00235 Tsu-Chr7 1759595 1773270 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00235 K17609 - gmx:100815038 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00235 07 1759595 1773270 Tsu07g00235 07 1759595 1773270 ECH