Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00233 ATGGCATTAATCAAATCAAAGGTAAACTTTCACTTGCAAAACTCTCTTTTCCCTCTCTTACCACACACTTTCAGActatgttcttcttcttcttcacctcTTCTTTCACAACACGACACCGACAACGACACTTCTCGAAACACCAATCTATCCTCCGAAGACACTCAAATAGTCGACAAGTTTCACACCATAATCAAAGATCACTACCGcaaaaaccctaaccctaatccCATTTCACCCTCACACAATTTCTCCATACCCGATCTTTCCATCGATTTTTCCAAAATCTCCACCGTTCATTCAATTTCACCCTCCATCACACGCCGTGTCATTGAGAAATGCGGTGGTGTCCGCCACGGTATTCCATTTCTCCAATCCCTAGCTTTTTTCAATTGGGCCACTTCACTCGAAGGTTTTCCCTCATCCCCGGAGCCCTACAATGAAATGATTGATCTTGCTGGAAAGCTCAGACATTTCGATTTAGCTTGGAATTTGATCGATTTGATGAAATCACGCGGAGTTGAAATAACAGTCAGCACATTCTCTGTTCTTGTCCGGCGATACATTAGGGCCGGATTGGCTGCGGAGGCGGTGCACGCTTTTAACCGAATGGAGGACTATGGTTGTAAACCTGATAAGGTTTCATTTTCTATTGTTATTAGTAGTTTATGTAAGAAGAGAAGAGCGAGTGAAGCACAATCGTTTTTCGATAGTCTTAAGCATAAGTTTGAACCTGATGTTATAGTTTATACTAGCTTAGTGCATGGTTGGTGTCGTGCTGGTGACATATCGAAAGCTGAGGAGGTTTTCAGTGATATGAAGGTGGCTGGTGTTAAACCTAATGTTTATACTTATAGCATTGTGATTGATTCGTTATGTCGGTGTGGACAAATCACTCGTGCTCATGATGTTTTCTTGGAGATGATTGATGCGGGATGTGCTCCTAATGCTGTTACTTTCAATAGTCTTATGAGGGTTCATGTGAAAGCTGGTAGGACTGAAAAGGTTTTGCAGGTTTATAATCAAATGAAGAGACTTGGCTGTGTTGCTGATACTATTAGTTATAATTTCATAATTGAGAGTCATTGTAAGGATGAGAATCTCGATGAAGCTGTGAAGGTTCTTGATACAATGGTTAAGAAAGGTGTTGCTCCTAATGCATCtactttcaattcaatttttggATGCATAGCTGAATTGCATGATGTGAATGGCGCACATCGGATGTATGCTAAAATGAAGGATCTGAAGTGCAAGCCTAATACCTTGACTTTTAATATACTGATGAGAATGTTTGCTGACTCAAAATCTATTGATATGGTTCTGAAGTTGAAAAAGGAAATGGATGAGAGTGAAGTTGAACCTAATGTGAATACTTAccgaattttgattttgatgttttgtGAAAAGGGGCACTGGAATAATGCGTACAAGTTAATGAAGGAGATGGTTGAAGAAAAAAGCTTAAAGCCAAATCTGTCGATTTATGAAACGGTTTTGGAGCTGCTGAGGAAGGCTGGACAGCTTAAAATGCATGAAGAACTGGTCGATAAGATGGTTGCCAGAGGATTTGTCTCTCCTCGCCCTTTGTAG 1593 0.3842 MALIKSKVNFHLQNSLFPLLPHTFRLCSSSSSPLLSQHDTDNDTSRNTNLSSEDTQIVDKFHTIIKDHYRKNPNPNPISPSHNFSIPDLSIDFSKISTVHSISPSITRRVIEKCGGVRHGIPFLQSLAFFNWATSLEGFPSSPEPYNEMIDLAGKLRHFDLAWNLIDLMKSRGVEITVSTFSVLVRRYIRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAQSFFDSLKHKFEPDVIVYTSLVHGWCRAGDISKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRCGQITRAHDVFLEMIDAGCAPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCVADTISYNFIIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKDLKCKPNTLTFNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYKLMKEMVEEKSLKPNLSIYETVLELLRKAGQLKMHEELVDKMVARGFVSPRPL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Tsu07g00233 530 MobiDBLite consensus disorder prediction 33 52 - -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 491 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Tsu07g00233 530 Gene3D Tetratricopeptide repeat domain 334 447 IPR011990 GO:0005515
Tsu07g00233 530 Pfam PPR repeat family 351 395 IPR002885 -
Tsu07g00233 530 Pfam PPR repeat family 186 225 IPR002885 -
Tsu07g00233 530 Pfam PPR repeat family 245 294 IPR002885 -
Tsu07g00233 530 Pfam PPR repeat family 424 468 IPR002885 -
Tsu07g00233 530 Gene3D Tetratricopeptide repeat domain 109 228 IPR011990 GO:0005515
Tsu07g00233 530 Gene3D Tetratricopeptide repeat domain 229 333 IPR011990 GO:0005515
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Tsu07g00233 530 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Tsu07g00233 530 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 13 526 - -
Tsu07g00233 530 Gene3D Tetratricopeptide repeat domain 448 522 IPR011990 GO:0005515
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Tsu07g00233 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 526 - -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Tsu07g00233 530 Pfam PPR repeat 318 348 IPR002885 -
Tsu07g00233 530 Pfam PPR repeat 146 174 IPR002885 -
Tsu07g00233 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00233 133 527 Glycosyltransferase AT1G05670 28.465 6.87e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00233 - - gmx:100800850 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00233 07 1751052 1753052 Tsu07g00233 07 1751052 1753052 ECH