Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00224 ATGAATAAATGGACTACCAACCTTCCAACCGTTAAGCCTTTCTATGCAGTGAAATGCAACccaaatatttcaattatagGTGCATTGGCTGCACTCCGCTCCAATTTTGACTGTGCTAGCCGCGCCGAAATTGAATCCGTTTTATCACTCGGCGTTTCACCTGACAGAATTATTTACGCCAACCCGTGTAAATCGGAATCCCACATTAAATATGCCGCATGTGTTGGTGTAAACCCGGAGGAAGACAGCGGAGCGTGGTGTTGTTTGGATCTCAAATACAGTGCGCTTCTTGAGGAAGTTCCCGAGCTTCTCAAAGTTGCTGACATGGCAGGACTTAAAGTAATCGGCGTGTCGTTTCACATAGGTAGTGGAGGAGCCGACTCACGAGCCTACAATAATGCCATTTTATTGgctaaaaatgtttttgaaacCGCCTTACGCCTTGGAATGTCGAAAATGAAAATTCTCGATATTGGTGGTGGATTCACGTCTGGGTCAAAATTTGACGAAGCATCATTAAACATTAATGATGCAATTAATTCTTATTTCGAAAACGAAGATGATCTTATTATTATTGGTGAACCTGGTCGTTATTTTGTTGAAACGGCATTCACCTTAGCAACAAAAGTTATTGGAAAACGTGTGAGAAGTGAATTAAGAGAATATTGGATTGATGATGGGATTTATGGAACCCTCAATaacattgtgtttgataatGCTATTCTCAAGTGCATGACACTTAGGTTTGGTTCAAAACCTGAAAACATTACATGCAAATATTCCAAAACTTACCCTTCAATTCAACAGTTTTTGGACCCACTTGTGATTCATTTGATACGATACTTAAAAAGTACCCATTACCCGAACTTGAGGTGGACGATTGGCTAG 888 0.3874 MNKWTTNLPTVKPFYAVKCNPNISIIGALAALRSNFDCASRAEIESVLSLGVSPDRIIYANPCKSESHIKYAACVGVNPEEDSGAWCCLDLKYSALLEEVPELLKVADMAGLKVIGVSFHIGSGGADSRAYNNAILLAKNVFETALRLGMSKMKILDIGGGFTSGSKFDEASLNINDAINSYFENEDDLIIIGEPGRYFVETAFTLATKVIGKRVRSELREYWIDDGIYGTLNNIVFDNAILKCMTLRFGSKPENITCKYSKTYPSIQQFLDPLVIHLIRYLKSTHYPNLRWTIG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00224 295 Gene3D Alanine racemase 1 76 IPR029066 -
Tsu07g00224 295 PRINTS Ornithine decarboxylase signature 13 40 IPR002433 GO:0006596
Tsu07g00224 295 PRINTS Ornithine decarboxylase signature 57 81 IPR002433 GO:0006596
Tsu07g00224 295 PRINTS Ornithine decarboxylase signature 226 239 IPR002433 GO:0006596
Tsu07g00224 295 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 80 246 IPR002433 GO:0006596
Tsu07g00224 295 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 1 78 IPR002433 GO:0006596
Tsu07g00224 295 SUPERFAMILY PLP-binding barrel 2 202 IPR029066 -
Tsu07g00224 295 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 15 33 IPR000183 GO:0003824
Tsu07g00224 295 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 35 47 IPR000183 GO:0003824
Tsu07g00224 295 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 149 163 IPR022657 -
Tsu07g00224 295 SUPERFAMILY Alanine racemase C-terminal domain-like 182 246 IPR009006 GO:0003824
Tsu07g00224 295 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 2 78 IPR022644 GO:0003824
Tsu07g00224 295 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 90 200 IPR022644 GO:0003824
Tsu07g00224 295 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 197 267 IPR009006 GO:0003824
Tsu07g00224 295 Gene3D Alanine racemase 77 196 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00224 Tsu-Chr7 1665736 1666704 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00224 K01581 - gmx:547682 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00224 07 1665736 1666704 Tsu07g00224 07 1665736 1666704 ECH