Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00206 aTGGCTTTCTCCACCACTTCCTTACTTTCCACAAACTTCTTAGGAGCAAGAAACATTCCAACCCCTAAAACAACCAAACCATCAATTTCACTTCCATTATTCTTCAAAACTAAATTCTTAAATTCTCAAAAATCAAACAATGATTCAGAGCCACTCAAATCCGCTGCTGTATCCGCTCTTATCTTATCTTCTATGTCTCTTAATATAACTCCGGTGGCTCTCGCCGCCGACAACATCACACCACCACCGGTACTCGAAGCACAACCAAACCAACTAAACCCTACAAATTCAACTTCACCTTTCTCACAAAACATTTCACTCACAGCACCGAAACCACAAGCGCAATCTTCCACCGATCTTCCCGACGGTAGCCAGTGGCGTTACAGTGAGTTTTTGAATGCGGTTAAGAAAGGTAAAGTTGAAAGAGTTAGGTTCAGTAAAGACGGTTCTGTCCTTCAACTAACCGCCGTTGATGGACGGAGAGCTAACGTTACTGTTCCTAACGACCCTGATTTAATAGACATTTTAGCAATGAACGGCGTTGATATTTCCGTTTCCGAAGGTGAACAAGGTAACGGTTTATTCAATTTCGTTGGTAGTTTATTGTTACCATTCCTTGCATTTGCGGGTTTGTTTTTGATCTTTCGTCGTGGCCAAGGAGGACCCGGTGGGCCTGGTGGGCTTGGAGGGCCCATGGATTTTGGTAGATCGAAATCAAAATTCCAAGAAGTACCAGAAACTGGTGTTACTTTTGCTGACGTGGCTGGTGCTGATCAAGCTAAGCTTGAATTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTACACTGCTTTAGGTGCTAAGATTCCTAAAGGGTGTCTTTTGGTTGGGCCACCGGGAACCGGAAAGACACTATTAGCGAGGGCGGTTGCCGGGGAAGCTGGTGTACCGTTCTTTTCGTGTGCGGCTTCGGAGTTTGTGGAATTGTTTGTTGGTGTTGGTGCTTCTAGGGTTAGGGATTTGTTTGAGAAGGCAAAGTCGAAGGCGCCTTGCATTGTGTTTATTGATGAAATTGATGCTGTTGGGAGACAGAGGGGTGCTGGACTTGGTGGTGGGAATGATGAGAGGGAACAGACAATTAATCAGCTTTTGACTGAGATGGATGGATTTTCGGGTAATTCGGGGGTTATTGTTTTGGCTGCTACTAATAGACCTGATGTTCTTGATTCTGCATTGCTTAGACCTGGAAGGTTTGATAGGCAAGTTACTGTCGATAGGCCTGATGTTGCTGGTAGAGTTAGAATCCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGACAAAATTGCTAGGAGAACCCCAGGGTTTACAGGGGCTGATCTACAGAATCTGATGAATGAAGCAGCTATTCTTGCTGCCAGGCGTGATCTCAAGGAAATAAGTAAAGATGAGATAGCGGATGCGCTTGAAAGGATCATTGCTGGAccagaaaagaaaaatgctGTTGTCtcagaagagaagaagaaattagtaGCCTATCAtgAGGCTGGCCATGCTTTAGTAGGTGCTTTGATGCCTGAATATGACCCTGTAGCCAAGATATCCATTATACCTCGTGGCCAAGCTGGTGGTCTCACCTTTTTTGCTCCCAGTGAAGAGAGGCTTGAATCTGGATTGTACAGTAGAAGTTACTTGGAAAATCAAATGGCCGTTGCTCTTGGAGGAAGGGTCGCCGAGGAGGTTATTTTTGGCCAGGATAATGTCACCACTGGGGCATCAAATGACTTCATGCAAGTTTCACGGGTGGCGAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAGATTGGTCAAGTTGCCATCGGCGGCGGTGGTGGAAATCCATTCTTAGGACAACAGATGTCATCACAAAAAGATTATTCCATGGCAACTGCTGATATAGTGGATAAGGAAGTTAGGGAACTGGTAGATAAAGCATATATCAGGGCAACAACAATTATCAACACTCACATTGATATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACAGTTGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCCGAATTGTTTGTTCAATAA 2121 0.4328 MAFSTTSLLSTNFLGARNIPTPKTTKPSISLPLFFKTKFLNSQKSNNDSEPLKSAAVSALILSSMSLNITPVALAADNITPPPVLEAQPNQLNPTNSTSPFSQNISLTAPKPQAQSSTDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVTVPNDPDLIDILAMNGVDISVSEGEQGNGLFNFVGSLLLPFLAFAGLFLIFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYIRATTIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVQ 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00206 706 Pfam Peptidase family M41 502 695 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g00206 706 PANTHER METALLOPROTEASE M41 FTSH 52 698 - -
Tsu07g00206 706 Pfam AAA+ lid domain 443 484 IPR041569 -
Tsu07g00206 706 SUPERFAMILY FtsH protease domain-like 502 696 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g00206 706 ProSitePatterns AAA-protein family signature. 391 409 IPR003960 GO:0005524|GO:0016887
Tsu07g00206 706 Gene3D Peptidase M41 498 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu07g00206 706 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 52 698 - -
Tsu07g00206 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 492 IPR027417 -
Tsu07g00206 706 MobiDBLite consensus disorder prediction 85 122 - -
Tsu07g00206 706 Gene3D - 120 192 - -
Tsu07g00206 706 CDD AAA 255 420 - -
Tsu07g00206 706 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 11 706 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g00206 706 Gene3D - 422 497 - -
Tsu07g00206 706 SMART AAA_5 284 423 IPR003593 -
Tsu07g00206 706 Pfam ATPase family associated with various cellular activities (AAA) 289 420 IPR003959 GO:0005524|GO:0016887
Tsu07g00206 706 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 195 695 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu07g00206 706 Gene3D - 239 421 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00206 Tsu-Chr7 1523882 1528186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00206 245 697 Miscellaneous Gene Families AT5G53170 50.000 3.97e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00206 K03798 - gmx:100803824 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00206 07 1523882 1528186 Tsu07g00206 07 1523882 1528186 ECH