Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00181 ATGGACCTTCGCCGCCTAACTCTTCTTTCTCTATTACAGGTTTGCTTACTTTTATCTTTAACAGAAGCACAAATTTTATCCTCAAAGCTTCTTTCGCCATCTAATGATAAAACACCaggGGAAAAACATTCTGAGGATTATTGTGCAATGTATGACATTTGTGGAAAGCGAAGTGACGGTAAAGTAGTCAATTGTCCATATGGTTCTCCTGCTGTGAAGCCAGATGATTTGCTTtcatcaaagattcaaagtttGTGTCCGACGATTACTGGGAACGTTTGCTGTACAGAAGCACAGTTTGAAACATTAAGGCAGCAAGTTCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTCTGAATCTATTCTGCGAGCTTACATGCTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAATTGACAAGGTTGGTGGTAATTTGACAGTGGGCGGCATCGATTATTTTGTAAGTGACGCATTTGGCGAAGGGTTATATGACTCCTGCAAGGATGTAAAGTTTGGCTCTGCGAATACTCGAGCTATGGACTTACTTGGCGGTAGGGCTAAGAATGTTAAAGAGTGGTTTGCTTTTATTGGTAAAAAAGCAACCCCTGGTGGTCTTGGTTCACCATATGCAATTACGTTCCAGCCAAATGCAACTAAGTCATCTGGAATGGAACCTATGAATGTTTCAGCCTATTCATGCGGTGATACTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAGTTCATCTTCAACTACCACAAAAAAGAGGGATTCATGCTCCTTGAAAGTTGGGACTTTAATGGTGAAGTGTGTTGACTTGACTTTAACAGTCTTATACATCACACTGATATGTGTGATCTTGGGTTGGGGATTGTATCATCGGAAAAGGGAAAGAAAGCCGGCATATAGAACAAAGTCAGTGTCTAATGTCGTTAGTGGTGGCATGATGTATTCTCGTAATCAGGAGAAGGACGAGAACCTACCAATGCATCAGATTATTGAAGATGTTTCACAAAACAGAAACGAAGTACGACTCTCAGCTGTGCAAGGATACATGTCAAATTTTTACAGGAAGTATGGATCATATGTAGCTAGAAACCCAATTATGGTCTTGGCTTCATCTTTGGTTATAGTTATTCTACTTTGTCTGGGTCTAATCAGATTAAAGGTTGAAACGCGGCCTGAGAAGCTTTGGGTGGGACCTGGAAGTAAAGCGGCTGAAGAGAAGCATTTTTTTGACAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATATTGGGAGTTccagatcatatgaatagtacatcATCAAGAATTGTGTCAGAGGACAACATTAGGTTTCTGTTTGAAGTACAAAAGAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACGCAAAGCATTCTTCAGTACTTCAAGATGGATCCCAACAATTTTGACAATTATGGTGGAGTTGAGCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGATAAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACCGTATTAGGAGGTTTTTCTGGGAATAACTATTCTGCGGCGTCTGCATTTATTATAACTTACCCAGTAAATAATGCTATTGATGAAGAAGGCAATGAAATTGCAAAGGCAATTGCTTGGGAGAAGACCTTTATTCAGTTAGTGAAGGACGAGTTGTTACCAATGGCACAGTCAAAAAATTTGACACTTGCTTTTTCATCTGAAAGCTCTATTGAGGAAgaattgaaaagagaaagtaCTGCAGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACACCCCAGCCTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTCATGCTGTCTGTCCTTGGATCTGTTGGAATTTTTAGTGCTCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGTATACTGGTTCATGCTGTGAAAAGGCAAGAGCTCGAGTTGCCTTTAGAAAGAAGGATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGCTGGAAGCTTTATTTCCATGCCCGCATGTCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTCCTTTTAGACTTTCTCCTGCAAGTCACTGCATTCGTTGCTCTGATAGTTCTTGACTCTTTGAGAGCAGAGGATAAAAGGGTTGATTGTTTCCCATGCATAAAAGTGCCTTCTTTGCATGCAGACCCTGATAAAGGCACTGAACAAAGGAAACCTGGTTTGTTGGCTCGATACATGAAGGAGGTTCATGCTCCAATTCTAAGTATTTGGGGAGTAAAAATAGTTGTCATTGCAATTTTTGTGGCATTTGCATTGGCTAGCATTGCTTTGAGCACTAGAATTGAACCTGGATTGGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTTAATAATGTTTCAGAATATCTCAGAATCGGGCCACCTTTGTATTTTGTTGTGAAGAACTATAACTACAGCTCTGAATCAACACATACAAATCAGCTTTGCTCCATAAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATCTCTAAAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAACCGGCTGCTTCTTGGCTCGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCACTAATGGGAGTTATTGCCCTCCTGATGACCAGCCTCCTTGCTGTGCTCCTGGAGATGGCTCTTGTGTTTCAGTTGGAGTATGTAATGATTGCACAACGTGTTTCCGTCATTCAGATCTCCATAAAGACCGTCCTTCCACAACACAATTTAGGGAGAAATTGCCGTGGTTTCTTAGTGCTCTTCCATCTGCTGACTGTGCAAAAGGTGGTCATGGGGCGTACACCAGCAGTGTTGAACTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCATTCCGTACATATCATACCCCACTCAACAAGCAGGCTGACTTTGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATTGAGATCTTCCCATATTCAgtgttttatatgttttttgagCAATACCTTAATATATGGAAGACTGCACTGGTCAACCTTGCAATAGCTATTGGTGCAGTGTTTATTGTGTGCTTGGTTATCACATGCAGCTTATGGAGTTCAGCGATCATTTTGTTGGTGTTGACAATGATTGTTGTTGATCTTatgGGTGTGATGGCCATTCTAAATATCCAATTGAATGCCATCTCAGTTGTCAACCTCGTTATGTCGGTGGGCATTGCTGTGGAGTTTTGTGTGCATATGACTCATTCTTTCAGTGTTGCAAGTGGAGATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAATTGGTTGGAGTTATTGTACTTTGCTTCTCAAGAACAGAAGTTTTTGTGGTTTATTACTTTCAAATGTACTTGTCATTAGTACTTCTTGGTTTTTTGCACGGACTTGTTTTCTTGCCGGTGGTATTGAGCATGTTTGGTCCACCTTCAAGATGTACAGTTACTGACCAAGGGGAAGGTCGTTCATCAACTTCGTCTTAG 3873 0.4002 MDLRRLTLLSLLQVCLLLSLTEAQILSSKLLSPSNDKTPGEKHSEDYCAMYDICGKRSDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRQQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSIDKVGGNLTVGGIDYFVSDAFGEGLYDSCKDVKFGSANTRAMDLLGGRAKNVKEWFAFIGKKATPGGLGSPYAITFQPNATKSSGMEPMNVSAYSCGDTSLGCSCGDCPSSSVCSSSSSTTTKKRDSCSLKVGTLMVKCVDLTLTVLYITLICVILGWGLYHRKRERKPAYRTKSVSNVVSGGMMYSRNQEKDENLPMHQIIEDVSQNRNEVRLSAVQGYMSNFYRKYGSYVARNPIMVLASSLVIVILLCLGLIRLKVETRPEKLWVGPGSKAAEEKHFFDSHLAPFYRIEQLILGVPDHMNSTSSRIVSEDNIRFLFEVQKKVDAIRANYSGLMVSLQDICMKPLDKDCATQSILQYFKMDPNNFDNYGGVEHLNYCFEHYSSADKCMSAFKGPLDPSTVLGGFSGNNYSAASAFIITYPVNNAIDEEGNEIAKAIAWEKTFIQLVKDELLPMAQSKNLTLAFSSESSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPQPSSFYISSKVLLGLSGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQELELPLERRISNALVEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVPSLHADPDKGTEQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEISKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDGSCVSVGVCNDCTTCFRHSDLHKDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQADFVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLTMIVVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHMTHSFSVASGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCTVTDQGEGRSSTSS 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00181 1290 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 590 790 - -
Tsu07g00181 1290 Pfam Patched family 1055 1270 IPR003392 GO:0016021
Tsu07g00181 1290 Pfam Patched family 459 906 IPR003392 GO:0016021
Tsu07g00181 1290 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1080 1271 - -
Tsu07g00181 1290 TIGRFAM 2A060601: Niemann-Pick C type protein family 48 1271 IPR004765 GO:0005319|GO:0016021
Tsu07g00181 1290 ProSiteProfiles Sterol-sensing domain (SSD) profile. 627 790 IPR000731 -
Tsu07g00181 1290 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1289 - -
Tsu07g00181 1290 Pfam Niemann-Pick C1 N terminus 46 278 IPR032190 -
Tsu07g00181 1290 PANTHER PATCHED FAMILY PROTEIN 6 1289 - -
Tsu07g00181 1290 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1078 1275 - -
Tsu07g00181 1290 Gene3D Multidrug efflux transporter AcrB transmembrane domain 587 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00181 Tsu-Chr7 1360856 1378160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00181 42 1290 Miscellaneous Gene Families AT1G42470 72.960 0.0 1844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00181 K12385 - gmx:100813262 2172.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00181 07 1360856 1378160 Tsu07g00181 07 1360856 1378160 ECH