Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00172 atgaatgaagttgTTCCGTTGAGCCATAGCCAGCCAGCCTGTATCGCGGTCGTTGGAATATCAGAACACTCTTCACATCTCTCTCCggaacaaaattatttaaacccaaaatttcatcttctcttttttattttcattcaattcaatccCTTTAATTctaattcaacaaaaaattatataaatcttcttcttcttcttcttcttcttcttcccacGAACCAAATCCCTAACCTTCTTCGACTTGCTTCTGTTGCGCGCGATCTACGACACAAAATGGCAGCACCGAACATGGATCAGTTCGAATCCTTTTTCAGACGAGCAGATTTAGACGGTGATGGTAGAATCAGTGGTGCTGAGGCTGTCAATTTCTTTCAGGGATCCAATTTACCTAAACACGTTCTCGCTCAgGTATGGATGCATGCTGATCAGGCTAAAACTGGTTTCCTTGGGCggaatgaattttttaatgCTTTGAGATTAGTAACTGTTGCACAGAGTAAGCGAGATTTAACTCCTGATATTGTCAAAGCAGCGCTATTTGGTCCAGCTGCTGCTAGAATTCCTGCACCGCAGATAAATCTTGCTGCTATACCTCCACAACGTCCGAATCCAGTGGCTGCTTCATCTGTTGGGCAGATGGGTGTGAGTGCTGGACCTACATCGGCTCAAGGTTATGCCTATAGAGGACAGGGGTTAACAGGTTCTGTTGCAAACCCACAATATCTTCCTTCCCAGCAGAATGCTAACATGAGACCTCCTCAATCACAGGGGTTTGCCGGTACTGTCGGGAACCAGCAATATCTACCTTCACAGCAGAGTGCTAACATGAGACCGCCTCAATCACAGGGGTTTGCAGGTTCTGTTGGGAACCAGCAATATCTACCTTCCCAGCAGAGTGCTAACATGAGACCACCTCAATCACAGGGGTTCCCAGGTTCTGTTGCAAACCAGCAATATCCACTTTCCCAGCAGAGTCCTACCATGAGACCACCTCAATCACAGGGGTTCCCAGGTTCTGTTGCTAACCAGCAATATCCACCTTCCCAGCAGAGTTCTATCATGAGACCACCTCAATCACAGGGGTTAGCAGGTTCTGTTTCAAACCAACAATATCTTCCTTCCCAGCAGAGTCCGACCATGAGACCAACTCAATCCATGCCTGCTGGTAGTGCCCTTGGTTCACAACAATTCATGCCTGCTGGTAACACTCCCCGTCCACAACAACCATTGCCTGCTGGCACAACCCCTCATCCACAACAGGGCTTTGCAGGTCCCAATCTCTCAAATGCTAGCATCTCAAATGATTGGAATGGTGGAAGGACTGGTATGGCTCCTTCTAGGCCTGCAGGAATCACTCAACCAGTTGCCTTATCAACCCCAACATCGCCATCTCCGGTCTCACCAATGTCACAGCCAACAGCTGTTACCACTAAAGCATTGACTGTTTCTGGAAATGGGTACCCTTCAAATTCAGTTTTGGACGAAGATTTATTCTCTACTGCCGCATCCACACCGAAACAAGACCCTTCTCGACAGAATTATTCTGTTAGCAGTGCACCTGCCTCATCATCCATTGTCCCAGTTTCCAATAGTGCCCTCCCTGCAAGTAGGAAAAGTTCACTTGATTCATTGCAGAGTTCATTCTCAATGTCACCCACAAATAGTCAGATTCCGCGGGCGCATTCTTTACCAAACACAAACCAGCAAATGTCACCACCAGCTTCTTCTCCGCTTACCACATCTGGGAGATCGGTTGGACCTGGAAATACTAGTTCTGACAACTCACAGCCTCCGTGGCCAAAAATGAAACCTTCTGATGTCCAGAAGTATACAAAGGTGTTTATGGAAGTTGACACTGACAGGGATGGGAAAATCACGGGGGAGCAGGCACGCAGTCTATTTTTAAGTTGGAGATTACCAATAGATGTCTTAAAGAAGGTGTGGGACTTATCTGATCAGGATAATGATAGCATGCTTTCTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAGCGATACAGGGAAGGCCGTCCTCTTCCACAGTCTCTTCCAAGTAATGTTATATTTGACGAAACATTGATGTCTATGACGGGGCCTCCAAAAACCGCTTATGGAAATGCAGCATGGGGGGTAGGCCCAGGTTTTCAGCAGCAACAAGGGATGCCAGGCGCTCAGCCAGCGGCACCAGCAGTGCAAGGAACGCCTCCTCAGGCTGATGACACTTTGCCAACTGATCAGAAAAAGCTTGGAACATCTGCATTGGATGATTCCTTTTTGAATGGCACAGATAACAGTGAGCAAAATATTGAGACTGCAGGGAAAAAGGCTGAAGAAACACAGAATGTGATATTGGATTCAAGAGAGAAGATTGAGTTGTACCGCAACAAAATGCAGGAATTGGTCCTGTATAAAAGCAGATGTGATAACCGCCTAAATGAGATTACAGAAAGGGCATCTGCAGATAAGCGTGagGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTGGCAGAAATAGCATCCAAATTGACTGTAGAAGAGGCTAAATTTCGTGACATACAGgaaaggAAGACGGAATTGCAGCAAGCCATCGTCAAAATGGAACAAGGAGGCAGTGCAGATGGTATTCTTCAGGTTCGTGCTGATCGCATACAATCAGATCTTGAGCAGTTATTTAAAGCTCTTGCTGAACGGTGCAACAAACATGAGATAAATGTGAAGTCAATTGCAATGGTTCAGCTTCCTGATGGTTGGCAACCCGGAAATCCAGAGGAGGCAGCTGTTTGGGATGAAGATTGGgataaatttgaagatgaaggATTTGCCAATGATCTCACTTTTGATACGAAAAATGCATCTTCAGAGCCAAAACCTTCATCTGTTCCCGCAGAACAAAATTCCTTTGATGATAATTCAGTTTATGGTTCACCTGTGAATGCAAATGGGAGGCAAGAACATTTTACTAATGGTGATTATACAGTTGAGGAGGAATCTTCTTATGCACAGAGTGAAGAGGGCTCGGCAAGAAGCCCCCGCGATAGTCCATTTGGAAGGAATACAGCAGAGAGTCCTTCTAAAGAGTTTTCAACTGCTCATTTTGAAAAAAGTCCTGAAGCAGATGCAGAAACACATAGAAGTTTTGATGAATCAACCTGGGGTGCATTTGACAATAACGATGATGTGGACTCGGTGTGGGGTTTTAACACCAACAAGGTAACGTGTGTTCTATTCAGCTTTTCTCTTTAG 3258 0.434 MNEVVPLSHSQPACIAVVGISEHSSHLSPEQNYLNPKFHLLFFIFIQFNPFNSNSTKNYINLLLLLLLLLPTNQIPNLLRLASVARDLRHKMAAPNMDQFESFFRRADLDGDGRISGAEAVNFFQGSNLPKHVLAQVWMHADQAKTGFLGRNEFFNALRLVTVAQSKRDLTPDIVKAALFGPAAARIPAPQINLAAIPPQRPNPVAASSVGQMGVSAGPTSAQGYAYRGQGLTGSVANPQYLPSQQNANMRPPQSQGFAGTVGNQQYLPSQQSANMRPPQSQGFAGSVGNQQYLPSQQSANMRPPQSQGFPGSVANQQYPLSQQSPTMRPPQSQGFPGSVANQQYPPSQQSSIMRPPQSQGLAGSVSNQQYLPSQQSPTMRPTQSMPAGSALGSQQFMPAGNTPRPQQPLPAGTTPHPQQGFAGPNLSNASISNDWNGGRTGMAPSRPAGITQPVALSTPTSPSPVSPMSQPTAVTTKALTVSGNGYPSNSVLDEDLFSTAASTPKQDPSRQNYSVSSAPASSSIVPVSNSALPASRKSSLDSLQSSFSMSPTNSQIPRAHSLPNTNQQMSPPASSPLTTSGRSVGPGNTSSDNSQPPWPKMKPSDVQKYTKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLSLKEFCFALYLMERYREGRPLPQSLPSNVIFDETLMSMTGPPKTAYGNAAWGVGPGFQQQQGMPGAQPAAPAVQGTPPQADDTLPTDQKKLGTSALDDSFLNGTDNSEQNIETAGKKAEETQNVILDSREKIELYRNKMQELVLYKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERKTELQQAIVKMEQGGSADGILQVRADRIQSDLEQLFKALAERCNKHEINVKSIAMVQLPDGWQPGNPEEAAVWDEDWDKFEDEGFANDLTFDTKNASSEPKPSSVPAEQNSFDDNSVYGSPVNANGRQEHFTNGDYTVEEESSYAQSEEGSARSPRDSPFGRNTAESPSKEFSTAHFEKSPEADAETHRSFDESTWGAFDNNDDVDSVWGFNTNKVTCVLFSFSL 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 236 473 - -
Tsu07g00172 1085 Coils Coil 777 797 - -
Tsu07g00172 1085 Gene3D - 92 190 - -
Tsu07g00172 1085 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Tsu07g00172 1085 SUPERFAMILY EF-hand 95 174 IPR011992 -
Tsu07g00172 1085 Pfam Cytoskeletal-regulatory complex EF hand 600 688 IPR000261 GO:0005515
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 950 1057 - -
Tsu07g00172 1085 CDD EH 100 166 IPR000261 GO:0005515
Tsu07g00172 1085 SUPERFAMILY EF-hand 594 689 IPR011992 -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 452 473 - -
Tsu07g00172 1085 SMART eh_3 89 184 IPR000261 GO:0005515
Tsu07g00172 1085 SMART eh_3 599 694 IPR000261 GO:0005515
Tsu07g00172 1085 Gene3D - 588 691 - -
Tsu07g00172 1085 PANTHER EH DOMAIN 92 1075 - -
Tsu07g00172 1085 CDD EH 610 676 IPR000261 GO:0005515
Tsu07g00172 1085 SMART efh_1 133 161 IPR002048 GO:0005509
Tsu07g00172 1085 SMART efh_1 609 637 IPR002048 GO:0005509
Tsu07g00172 1085 SMART efh_1 643 671 IPR002048 GO:0005509
Tsu07g00172 1085 SMART efh_1 99 127 IPR002048 GO:0005509
Tsu07g00172 1085 Pfam EF hand 101 117 IPR002048 GO:0005509
Tsu07g00172 1085 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 92 1075 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 1032 1053 - -
Tsu07g00172 1085 ProSiteProfiles EH domain profile. 606 689 IPR000261 GO:0005515
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 715 763 - -
Tsu07g00172 1085 ProSiteProfiles EF-hand calcium-binding domain profile. 639 674 IPR002048 GO:0005509
Tsu07g00172 1085 ProSiteProfiles EH domain profile. 96 186 IPR000261 GO:0005515
Tsu07g00172 1085 Coils Coil 847 867 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 738 763 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 236 403 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 543 605 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 502 527 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 419 440 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 543 601 - -
Tsu07g00172 1085 MobiDBLite consensus disorder prediction 950 1031 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00172 Tsu-Chr7 1285200 1296689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00172 95 278 EF-hand Containing Proteins AT1G20760 55.026 1.19e-50 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00172 K12472 - cam:101508239 1603.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00172 07 1285200 1296689 Tsu07g00172 07 1285200 1296689 ECH