Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00044 ATGGGTTTCTTCAGTACTATATTCGgattttttggatttggaatTGGGATTTCCATTGGTCTCATTTCTGGCTATTTTCTCTTCATTTACATTCTACCCACTGATGTTGAGGATCCTGAAATCAAGCCATTGGAGGAGGAAGAGGAGGAAGTTTTGCAACGAATGATGCATGAGATTCCACTCTGGATAAAAAATCCAGACTTTGATCGGGTTGATTGGCTAAACAAGCTCATAGAGTATATGTGGCCGTACCTTGACAaggCAATATGCACTACTGCAGAAAATATAGCAAAGCCCATAATTGCTGAGCAGATTccaaattataaaattgatgcTGTTGAGTTTGAAGCGCTCACATTGGGATCCCTTCCACCAACATTTCAAGGAATGAAAGTTTACATGACTGAAGAAAAGGAATTAATTATGGAGCCCTCTATAAAATGGGCTGCAAATCCTAATGTCATCATTGCAGTTAAGGCATTTGGGTTGAAAGCAACCGTTCagGTGGTAGATTTGCAAGTTTTTCTTATACCTCGTATTACTTTGAAGCCTTTGGTTCCAAGTTTTCCTTGCTTTGCCAACATTTATGTTTCTCTCATGGAAAAGGTTTGTGATTGTTATTTGTTACAATTTCTATCTATAAATTTTCCTATAATTTTGACATTTGCTATCGTGCAGCCACACGTTGATTTCGGACTAAAGCTTGTAGGAGCTGATCTCATGTCTCTTCCTGGGTTGTACAGGTTTGTTCAGGAAACTATCAAAGATCAGGTTGCAAATATGTATCTGTGGCCCAAAACTTTGGAAGTTCAAATCATAGATCCAACAAAAGCCTTCAAAAGGCCAGTTGGAATTTTAAATGTAAAGGTTGTAAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGCGCATCGGATCCTTATGTGAAGCTAAAGCTTACCGGGGATAACCTGCCATCAAAAACGACCACCGTGAAGCACAAAAACTTGAACCCCGAATGGAACGAGGAATTTAGTTTTGTTATTAAAGATCCCGAGACTCAGGCTTTGGATCTTCATGTTTATGACTGGGAACAAGTTGGGAAGCATGACAAGATGGGTATGAATGCAATCCAATTGAAAGAAGTGACCCCTGAAGAGCCTAAAGTTTTCACTCTTgagcttttgaaaaatatggatCCCAATGATGCCCAAAATGAGAAGTCTCGTGGACAGATTGTTCTTGAAGTAACATATAAACCATTTAAAGAGGAAGAAATGAACAAAAGTTTTGATAGGATACAATCACTTCAAATAGCACCTGAAGGCACTCCTCCAGGGGGAGGTCTTCTTGTAATTGTAATACATGAAGCTCAAGATCTTGAAGGAAAATACCACACCAATCCACATGCACGTCTTACTTTCAAAGGGGAAGAGAGAAAGACTAAGacCATGAAAAAGAATAGAGATCCAAGATGGGAAGAGGAGTTTCAATTTATGGTGGAGGAACCTCCCACTAATCAGAAATTACATGTGGAAGTTTTCAGCACTTCGTCACGAAATTTGTTGCGTCAAAAGGAATCATTGGGTTATATTGACATCGGTCTTGCGGATGTTGTTACTAACAAGAGAATCAATGAGAGGTACCACCTTATAGACTCCAAAAATGGTCGAATACAAATTGAGATACAATGGATAGCCTCATAA 1686 0.376 MGFFSTIFGFFGFGIGISIGLISGYFLFIYILPTDVEDPEIKPLEEEEEEVLQRMMHEIPLWIKNPDFDRVDWLNKLIEYMWPYLDKAICTTAENIAKPIIAEQIPNYKIDAVEFEALTLGSLPPTFQGMKVYMTEEKELIMEPSIKWAANPNVIIAVKAFGLKATVQVVDLQVFLIPRITLKPLVPSFPCFANIYVSLMEKVCDCYLLQFLSINFPIILTFAIVQPHVDFGLKLVGADLMSLPGLYRFVQETIKDQVANMYLWPKTLEVQIIDPTKAFKRPVGILNVKVVKAMKLKKKDLLGASDPYVKLKLTGDNLPSKTTTVKHKNLNPEWNEEFSFVIKDPETQALDLHVYDWEQVGKHDKMGMNAIQLKEVTPEEPKVFTLELLKNMDPNDAQNEKSRGQIVLEVTYKPFKEEEMNKSFDRIQSLQIAPEGTPPGGGLLVIVIHEAQDLEGKYHTNPHARLTFKGEERKTKTMKKNRDPRWEEEFQFMVEEPPTNQKLHVEVFSTSSRNLLRQKESLGYIDIGLADVVTNKRINERYHLIDSKNGRIQIEIQWIAS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00044 561 CDD C2 444 544 - -
Tsu07g00044 561 PRINTS C2 domain signature 301 313 IPR000008 -
Tsu07g00044 561 PRINTS C2 domain signature 350 358 IPR000008 -
Tsu07g00044 561 PRINTS C2 domain signature 328 341 IPR000008 -
Tsu07g00044 561 SMART C2_3c 285 385 IPR000008 -
Tsu07g00044 561 SMART C2_3c 443 541 IPR000008 -
Tsu07g00044 561 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 559 IPR045050 GO:0008289
Tsu07g00044 561 Gene3D C2 domain 279 431 IPR035892 -
Tsu07g00044 561 Pfam C2 domain 284 382 IPR000008 -
Tsu07g00044 561 Pfam C2 domain 443 544 IPR000008 -
Tsu07g00044 561 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 559 - -
Tsu07g00044 561 Gene3D C2 domain 443 559 IPR035892 -
Tsu07g00044 561 CDD C2 286 388 - -
Tsu07g00044 561 ProSiteProfiles C2 domain profile. 426 542 IPR000008 -
Tsu07g00044 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 442 559 IPR035892 -
Tsu07g00044 561 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 273 IPR031468 GO:0008289
Tsu07g00044 561 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 201 IPR039010 -
Tsu07g00044 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 417 IPR035892 -
Tsu07g00044 561 ProSiteProfiles C2 domain profile. 264 386 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00044 Tsu-Chr7 378947 382076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00044 282 551 Lipid Metabolism Gene Families AT3G61300 29.553 1.92e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00044 - - cam:101497090 927.546