Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00043 ATGACTCGCACCATCGTCTTCATCCTTTCCGTAATATTAGTTCTCTTACCAGCTGCACTCGGAGATCATTCGGAAAAGGGTAAACGTGTTGCTGGTTTTCAGAATGTCACTTATGATGGAAAGTCACTCTTTATTAATGGAAGACGTGAACTCCTCTTCTCCGGTTCCGTCCATTATACTCGCAGCACCCCTGatATGTGGCCAGACATTCTTGAAAAGGCAAGACACGGAGGTTTGAACGTTATTCAAACTTACGTGTTTTGGAACGCCCATGAGCCAGAGAAAGGCAaaTTCAACTTTGAAGGCAACTATGATTTGGTGAAGTTCATTAAATTGATTCAAAAGAAAGGAATGTATGTGACCCTCAGGGTTGGGCCTTTCATCCAAGCCGAATGGAATCACggAGGTCTTCCATATTGGCTAAGAGAGGTTCCAGGGATCGTATTTCGTTCTGATAATGAGCCCTATAAGaaacacATGAAAGCATTCGTGGgaaaaattatacaaatgaTGAAAGACGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATTTTGGCACAGATTGAAAACGAGTACAATCATATCCAACTTGCTTATGAGGAGAATGGATATAATTATGTTCAATGGGCCGCAAAAATGGCAGTGGCCTTCGACACGGGTGTTCCGTGGATCATGTGCAAGCAAAAGGATGCTCCTGATCCCGTTGTCAACACATGCAATGGAAGACATTGTGGTGATACCTTCTCAGGACCAAACAAACCATACAAGCCCTCCATATGGACTGAAAACTGGACTGCTCAGTACAGAGTATTTGGTGATCCAATATCTCAAAGATCTGCAGAAGATATTGCCTTCTCAGTTGCTCGATTCTTCTCCAAGAATGGAAATTTGGTCAACTACTATATGTACCATGGTGGAACCAACTTTGGACGAACAACTGCTGCCTTTACAACAACCCGTTATTACGATGAGGCACCTCTTGACGAATACGGTCTTGAGAGGCAACCAAAATGGAGCCACCTCAAGGATGTCCACAAAGCCGTGCTCCTTTGCAGAAAGGCTATTCTTACTGGTGTTCCCACCGTCCAAAGGCTCAACACCTTCCACGAGATTAGAGTGTTTGAGAATCCTAAAGCAAATATATGTGCTGCTTTTATCACTAACAACCATACTACTGAAGCAGCCACAATCAATTTCAGAGGTTCTAACTACTTTTTGCCAGCACATTCCATCAGTGTCCTCCCCGATTGCAAGACTGTCGTTTACAACACACAAAGTGTTGTTTCTCAACATAATGCAAGGAACTTTGTGAGGTCTGCCGTTGCAAACAACTTCAAATGGGAGGTGTTTTCAGAGTCAATCCCATCAACCAATGAACTCAAATCAAATCAGAAATTTCCAGCAGAGCTTTACATCTTACTTAAAGACACCACAGATTATGGTTGGTACACCACCAGCTTTGAGTTGGGTCCAGAGGACTTGCCAAAGAAGAGTGGGGCATCCCCCGTTCTTCGTATTATGAGTCTCGGACACTCACTCTCCGCATTTGTTAATGGACAATACATTGGTACTGATCATGGTACCCATGACGataaaacttttgaatttgagCAACCCGCAAGCTTCAAGGTTGGAACCAACTACGTATCCATCTTGGCCACCACAGTTGGACTACCGGACAGTGGAGCTTACATGGAACACAGGTATGCTGGACCCAAGTCCATATCCGTCCTTGGTCTCAACACCGGAACAATTGATCTCACTAAAAACGACTGGGGTCACCAGGTTGGTCTCAAAGGCGAACAACTTAAAATTTTCTCTGAGGAAGGATCAAAGAAGGTGGAGTGGACTGGATCCGTAGGACAAGCACCTGCTCTCTCATGGTTTAAAACAAGATTTACCACACCAGAGGGTAGAGGTCCTGTTGCCATAAGGATGACTGGTATGGGAAAGGGAATGATTTGGGTGAACGGCCAAAGCATTGGTCGTCACTGGATGACATTCCTTTCTCCTCTTGGACAACCCACTCAATCAGAGTACCACATTCCAAGATCTTACCTCAACAATGGTAAAGACAATTTGCTTGTTATATTGGAAGAGGAGAAAGCTTGTCCAGAAAAGATTGAGATATTGAATGTCGACAGAGATACAATTTGCAGTTACATTGCAGAGAACGAACCTGCTAATGTCAATTCATGGGTATCTAAACGTGGAAAATTCCTTTCTGTTGTCAAAGGTGTTACTGGACCACAAGCTTTCCTCAAATGTCCAAGCGGCAAAAAGATTGTAGCTGTCGAATTTGCAAGCTTTGGTAATCCTTCTGGTTACTGTGGAAAGTTTAGTCTTGGCAATTGTAATGCTGCTTCTACTAAGAGCATTGTTGAGAAGGAATGCTTGGGGAAAGAAGAATGTATGGTTGCAGTGAGTAGTTCAAACTTCAATGGAAATGGTTGCCCAGATTTAGTGAAAATGCTTGCTATCCAAGCTAAGTGTTCTTACTAG 2505 0.4303 MTRTIVFILSVILVLLPAALGDHSEKGKRVAGFQNVTYDGKSLFINGRRELLFSGSVHYTRSTPDMWPDILEKARHGGLNVIQTYVFWNAHEPEKGKFNFEGNYDLVKFIKLIQKKGMYVTLRVGPFIQAEWNHGGLPYWLREVPGIVFRSDNEPYKKHMKAFVGKIIQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEENGYNYVQWAAKMAVAFDTGVPWIMCKQKDAPDPVVNTCNGRHCGDTFSGPNKPYKPSIWTENWTAQYRVFGDPISQRSAEDIAFSVARFFSKNGNLVNYYMYHGGTNFGRTTAAFTTTRYYDEAPLDEYGLERQPKWSHLKDVHKAVLLCRKAILTGVPTVQRLNTFHEIRVFENPKANICAAFITNNHTTEAATINFRGSNYFLPAHSISVLPDCKTVVYNTQSVVSQHNARNFVRSAVANNFKWEVFSESIPSTNELKSNQKFPAELYILLKDTTDYGWYTTSFELGPEDLPKKSGASPVLRIMSLGHSLSAFVNGQYIGTDHGTHDDKTFEFEQPASFKVGTNYVSILATTVGLPDSGAYMEHRYAGPKSISVLGLNTGTIDLTKNDWGHQVGLKGEQLKIFSEEGSKKVEWTGSVGQAPALSWFKTRFTTPEGRGPVAIRMTGMGKGMIWVNGQSIGRHWMTFLSPLGQPTQSEYHIPRSYLNNGKDNLLVILEEEKACPEKIEILNVDRDTICSYIAENEPANVNSWVSKRGKFLSVVKGVTGPQAFLKCPSGKKIVAVEFASFGNPSGYCGKFSLGNCNAASTKSIVEKECLGKEECMVAVSSSNFNGNGCPDLVKMLAIQAKCSY 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00043 834 SUPERFAMILY Galactose-binding domain-like 412 572 IPR008979 -
Tsu07g00043 834 Gene3D - 360 572 - -
Tsu07g00043 834 ProSiteProfiles SUEL-type lectin domain profile. 747 833 IPR000922 GO:0030246
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 67 85 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 652 668 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 122 141 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 316 332 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 260 275 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 297 312 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 179 194 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 46 63 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 PRINTS Glycosyl hydrolase family 35 signature 625 639 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 Pfam Galactose binding lectin domain 755 832 IPR000922 GO:0030246
Tsu07g00043 834 Pfam Glycosyl hydrolases family 35 42 348 IPR031330 -
Tsu07g00043 834 Gene3D Glycosidases 33 351 - -
Tsu07g00043 834 PANTHER BETA-GALACTOSIDASE RELATED 11 829 IPR001944 GO:0004553|GO:0005975
Tsu07g00043 834 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 181 193 IPR019801 GO:0004553|GO:0005975
Tsu07g00043 834 Gene3D - 745 834 IPR043159 -
Tsu07g00043 834 SUPERFAMILY (Trans)glycosidases 34 352 IPR017853 -
Tsu07g00043 834 Gene3D - 588 722 - -
Tsu07g00043 834 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 11 829 - -
Tsu07g00043 834 SUPERFAMILY Galactose-binding domain-like 591 740 IPR008979 -
Tsu07g00043 834 Pfam Beta-sandwich domain in beta galactosidase 357 428 IPR041392 -
Tsu07g00043 834 Pfam Beta-galactosidase jelly roll domain 615 699 IPR025300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00043 Tsu-Chr7 372830 376655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00043 36 832 Glycoside Hydrolase AT2G16730 60.399 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00043 - - gmx:100791456 1290.79