Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00020 ATGACGATCCATTCTGTAGTGATACAGAAGCTGCTGAGCACCAATGCCCACATTGGTCGTCAAGTCGCCACTCATCATTTCAAAGAATACACTTACGGCTTCCGCAACAAAATGGCCATTATCGATTCCGATAAGACCTTGACTTGCATGCGTAGTGCCTTCAATTTTATCTCTTCCCTTGCCCGCCAAAATGGACGCTTCATGTTCATCAACACCAACCCTCTCTTCGATGAAATCTTTGACCTTATGACCAAAAAAGTCGGCTGCTACAGCCCTTCTTCCAGTTCTCTCTGGCGCACCGGTGGATTCCTCACCAACAGCAACAGTCCCAAGAAGTTTCGCTCTCGCAACAAGAAGCTCTGCTTCGGTCCCACTCAGCCTCCCGATTGCATTGTCATTGTTGACACCGAGAGCAAGTCTTCTGTTATTGACGAGGCTTTCAAACTTCAGATTCCAATTGTAGCTCTCGTCGATTCTGCCATGCCACTCCATACTTTTAGCCGCATTGCTTATCCAATTCCTGTTAACCCGTCTGTTCAATTTGTCTATCTGTTCTGTAATTTGATTACCAAAACACTGCTTCTTGAGAAGAAGAACTTGCAGCTCTCTAACCCCAAAATTGATGATCGAGAAAACGCTACCAAAATTGAAGATAACAAGAGGAAGAATAATCTGGCTAAGGTTGGCATCACTGTTATGCCCTACGATAAATTGGCACCCTTGCCCGAAGCAGATATAGAAGAAACGAAGAAACTTTTGGACAAGCTTGTTGTTTTGAAGGTCAATCACGACTCTGGAAGAAATATGGGCTTTGAAAACCCCAAATCCGCAATAGATATTTGTGATGGACAGACATTTCTAGACATGATTGTTAACCAGATTGAGACCCTCAACTCCAAGTTTGGATGCCAAGTTCCATTGcttatttttaacaaagatgACACTCACGATAGTACTTTAAAGGTTTTGGAAAAGTACTCGGAATCAAGCATTAATGTGCGCACTTTTAAGCAGGATGAAGATCCAGAGCTAACATTATCAGGTGGGCATAGCAGCAAGGAGGAAGTGCATACATTGGACGATGGTGATATATTCCGTTCACTAATGATAGGTGGAACCCTTGATTTATTAATGTCACAGggAAAGGAGTATATCCTTGTGATGAAGTCAGACAATGTGGCTACAATCGTTGATCTAAATATAATAAATCATTTGATGATAAACGCTATTGATTATTGCATGGAGGTGACACCAAGCCATTCATTTAATTTGATCTTAGCTCCAAAGAATTTTAagCTTAATGAGATTGCTCAAAACCAAGATAAACATTTGAAAGACAAATTCAAACTCATTGATACAACAAACATGTGGGTGAGCTTAAGAGCTATTAAGAGACTAATTGATACTAATAAACTAAAGCCCAAGAAGCCCTCAATTTCGAAGGAGAATGACTATGATCAAACTCCTCTGCAAGAAACCGATGCTGGACCAGCAGTACAGTTCTTTGATAATGTAATCGGTGTCTCAACACCTGAATCTCGTTTTCTTCCCTTGGACGCAACATCGGATTTACTTCTTCTACAGTCAGATCTATATACTTGTAGAGCAGGTGTTTTATCTCGCAATCCTGCTAGATCCAACCCTTTAAATCCTGTGATTGACCTGGGACCAGAATTTGAAAAGATTGGGGATTTCCAAAGTCGATTCAAATCCATTCCTAGTATCATCGGGTTGGATAGTTTGACGGTGAGAGGTGATGTGTGGTTTGGAGCTAATATTACTTTAAAGGGACATGTGACTATTGCTGCAAAAGCTGGCTTGAAATTGGAAATTCCAGATGGGGTAGTAATTGAGAATAAGGAGATTACTGACCCTGCAGATATCCAAGAATGA 1893 0.4073 MTIHSVVIQKLLSTNAHIGRQVATHHFKEYTYGFRNKMAIIDSDKTLTCMRSAFNFISSLARQNGRFMFINTNPLFDEIFDLMTKKVGCYSPSSSSLWRTGGFLTNSNSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVIDEAFKLQIPIVALVDSAMPLHTFSRIAYPIPVNPSVQFVYLFCNLITKTLLLEKKNLQLSNPKIDDRENATKIEDNKRKNNLAKVGITVMPYDKLAPLPEADIEETKKLLDKLVVLKVNHDSGRNMGFENPKSAIDICDGQTFLDMIVNQIETLNSKFGCQVPLLIFNKDDTHDSTLKVLEKYSESSINVRTFKQDEDPELTLSGGHSSKEEVHTLDDGDIFRSLMIGGTLDLLMSQGKEYILVMKSDNVATIVDLNIINHLMINAIDYCMEVTPSHSFNLILAPKNFKLNEIAQNQDKHLKDKFKLIDTTNMWVSLRAIKRLIDTNKLKPKKPSISKENDYDQTPLQETDAGPAVQFFDNVIGVSTPESRFLPLDATSDLLLLQSDLYTCRAGVLSRNPARSNPLNPVIDLGPEFEKIGDFQSRFKSIPSIIGLDSLTVRGDVWFGANITLKGHVTIAAKAGLKLEIPDGVVIENKEITDPADIQE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00020 630 PANTHER - 1 628 IPR016267 GO:0003983|GO:0006011
Tsu07g00020 630 Gene3D Hexapeptide repeat proteins 519 628 - -
Tsu07g00020 630 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 628 - -
Tsu07g00020 630 CDD RPS2 11 194 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 518 IPR029044 -
Tsu07g00020 630 SUPERFAMILY Ribosomal protein S2 8 200 IPR023591 -
Tsu07g00020 630 Pfam Ribosomal protein S2 126 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 Pfam Ribosomal protein S2 11 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 Gene3D - 2 194 - -
Tsu07g00020 630 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 604 IPR029044 -
Tsu07g00020 630 ProSitePatterns Ribosomal protein S2 signature 1. 8 19 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 Pfam UTP--glucose-1-phosphate uridylyltransferase 211 596 IPR002618 GO:0070569
Tsu07g00020 630 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g00020 630 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00020 Tsu-Chr7 218800 226312 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00020 K00963 - gmx:100812583 925.235