Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00017 ATGAGAAAGACGAAGAAGAGCAGCAGTACTACTTCAGATTCAGAGTGTTGTAAACAAGCAGCTGCTGTTGGTGAAGCAGCAGGAGAAAGAGACCAAACCCCTTCTGCTTCTGATGATGCTCCCAAGCTTGATGATGGATTCTATGAAATTGAAACCATACGCCGTAAGAGGCTCCGCAAGGGTGAGGTCCAGTACCTGATTAAATGGCGCGGGTGGCCAGAGACTGCCAACACTTGGGAACCTCTTCATAATCTACAGTCTGTTCCAGATCTCATTTATGCTTTTGAAGAAagCCTCAAATCAGGTGGTGGAGGAGCAGGAGTAGGTGTAGTAGGAGTAGGAGTAGGAGGAGCAAAACATCATCGCAAGCGCACCCGACGCACCACCACCCTTCCACCTCACTCTCAACCACCACAAACTGGAACATCCAATCTACTTAATACCTCACAACAACACATTGCTCAAACCAATCACCAAAATCATGCCAATCAACTCAAACCAACGCCAAATACTGGGGTCCGTGCAGATAACCTCGCAATACATTTCCAACAAACTCTCAATTCAACACCCAATGATGCTCAGTCCAACAGGGATTCACTTCAAACTGACCGCTGCACAGGAGCCAAAAGGAGAAAATCTAGCTCCGTTAAAAGGTTCAAGAAAGAGGATTCTGCATGTCAATCTGTTGACACAAAGAATGCAACTGACATCTCTGTTGGTAAGCTTGAACCCAGTTGGACAGAAACTGCTGGCTATATGGGGAATAACAGTCATCAAAACATTGCCAATGCTAAAACTGGCTGCAATATTGTCAAGATTATAAAGCCAATAGGCTATTCAGCTTCTCTATCTTGCTACATGCAAGATATATCAGTCACCTTTATGGCTTTGAGGTCTGATGGAACAGAAGTAATGGTGGATAACAAATATCTCAAGACAAATAATCCACTACTGCTGATCAATTTCTATGAGCAGCATCTCCGATACAATCCTACTTCTTAA 1002 0.4401 MRKTKKSSSTTSDSECCKQAAAVGEAAGERDQTPSASDDAPKLDDGFYEIETIRRKRLRKGEVQYLIKWRGWPETANTWEPLHNLQSVPDLIYAFEESLKSGGGGAGVGVVGVGVGGAKHHRKRTRRTTTLPPHSQPPQTGTSNLLNTSQQHIAQTNHQNHANQLKPTPNTGVRADNLAIHFQQTLNSTPNDAQSNRDSLQTDRCTGAKRRKSSSVKRFKKEDSACQSVDTKNATDISVGKLEPSWTETAGYMGNNSHQNIANAKTGCNIVKIIKPIGYSASLSCYMQDISVTFMALRSDGTEVMVDNKYLKTNNPLLLINFYEQHLRYNPTS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00017 333 ProSiteProfiles Chromo and chromo shadow domain profile. 48 97 IPR000953 -
Tsu07g00017 333 Gene3D - 31 100 - -
Tsu07g00017 333 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 23 164 - -
Tsu07g00017 333 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 147 332 - -
Tsu07g00017 333 MobiDBLite consensus disorder prediction 130 145 - -
Tsu07g00017 333 MobiDBLite consensus disorder prediction 1 43 - -
Tsu07g00017 333 SUPERFAMILY Chromo domain-like 37 100 IPR016197 -
Tsu07g00017 333 MobiDBLite consensus disorder prediction 186 202 - -
Tsu07g00017 333 MobiDBLite consensus disorder prediction 116 145 - -
Tsu07g00017 333 SMART chromo_7 47 100 IPR000953 -
Tsu07g00017 333 SMART ChS_2 259 332 IPR008251 GO:0005634
Tsu07g00017 333 ProSitePatterns Chromo domain signature. 65 85 IPR023779 -
Tsu07g00017 333 MobiDBLite consensus disorder prediction 186 223 - -
Tsu07g00017 333 CDD CD_CSD 48 97 - -
Tsu07g00017 333 Pfam Chromo (CHRromatin Organisation MOdifier) domain 48 97 IPR023780 -
Tsu07g00017 333 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 23 164 IPR044251 GO:0006325|GO:0031507
Tsu07g00017 333 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 147 332 IPR044251 GO:0006325|GO:0031507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00017 Tsu-Chr7 204845 209084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00017 - - cam:101503633 392.889