Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00016 ATGTCATGTTTATTGCCACACTTCAACTGTCACCTAGACACTTTCAGCATAACTACTATCAATcgatcagcagcagcagcaaccaAAACAATACACTTCCGCCCACAGTGTATTTTGTCTCCTTCAACCTCATCAACGCCACTCCTCATTTtctacaataataataacaaattccACGCTTGGCCCTGTGTCGCCGCTCAGCCAAACTTTAGGGCTGCAGAATCACTTCTTACTAGTGAAGAAGAGGCTGTTGTAACTATTGCTGCTTCTCAAGCCCTTGCTCTTGCTAAAGCAGCTGCAAAGCTTGCAAAGGCTGCAACTCTATTAGTCACAAACAAACCTCCACAACAACCAAGACCAGCTGGGAAGGCTGCCACAAATGTTCTGTCGTTTAAGTTTGGATCCACCGGCAAGGTAGATGTGGACTCTTCCGATCCACAGTGTTACTTAAGATCAACAACTACAGCTACAATGCTTCTTACTCCATCTGAACAAGTTAAGTTGTCTGAAGGAATACAGTTCTACATGGTGGGGGCAGCTTACAAAGTGAAGGAGGCAAGAAAACAATTGTACCGTGAAAATGGAAGACAGCCTGACGATGAAGAAGTTGCTGAAGCAGCTGGGATGTCAATGAAGAGGCTTAGTGCTGTACTTTTGACTCCAAAAGCTCCCAAATCTCTAGAAACGAAAATTGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTTGCTGATCCTGAAGCTCAAACAGCTAAGGAAAAGCTCGTTAAACAGATCATGAAAATGGACATGGAAAAGGTACTGGACTGTCTCAATCTAAGAGAGAAACAGGTGATTAGATGGAGATTTGGTGTGGATGATGGCAGGATGAAGTCCCTTCGAGAGATAGGGGAAATGATGGGTGTGAGTAAGGAGAGAATTAGACAAATTGAGGCATGTGCTTTTAGGAAGCTTGCGAATGAGAAGAGTGTCGAGCATTTGCAGTAG 987 0.4195 MSCLLPHFNCHLDTFSITTINRSAAAATKTIHFRPQCILSPSTSSTPLLIFYNNNNKFHAWPCVAAQPNFRAAESLLTSEEEAVVTIAASQALALAKAAAKLAKAATLLVTNKPPQQPRPAGKAATNVLSFKFGSTGKVDVDSSDPQCYLRSTTTATMLLTPSEQVKLSEGIQFYMVGAAYKVKEARKQLYRENGRQPDDEEVAEAAGMSMKRLSAVLLTPKAPKSLETKIGINQSLKPSEVLADPEAQTAKEKLVKQIMKMDMEKVLDCLNLREKQVIRWRFGVDDGRMKSLREIGEMMGVSKERIRQIEACAFRKLANEKSVEHLQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00016 328 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 176 244 IPR013324 -
Tsu07g00016 328 Gene3D - 253 328 IPR036388 -
Tsu07g00016 328 Pfam Sigma-70 region 3 181 253 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 118 173 - -
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 174 328 - -
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 72 138 - -
Tsu07g00016 328 Gene3D - 174 249 IPR036388 -
Tsu07g00016 328 CDD Sigma70_r4 263 318 - -
Tsu07g00016 328 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 230 320 IPR013324 -
Tsu07g00016 328 ProSitePatterns Sigma-70 factors family signature 2. 292 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 PRINTS Major sigma-70 factor signature 271 283 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 PRINTS Major sigma-70 factor signature 292 307 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 PRINTS Major sigma-70 factor signature 307 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 Pfam Sigma-70, region 4 267 318 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB-LIKE 174 328 - -
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB-LIKE 118 173 - -
Tsu07g00016 328 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB-LIKE 72 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00016 Tsu-Chr7 196138 198357 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00016 - - mcha:111022820 243.817